PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00047.1.g00360.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 277aa    MW: 29995.1 Da    PI: 4.6374
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00047.1.g00360.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.7e-152269148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEde+l + +++ G  tW+++a+  g++R++k+c++rw +yl
  Zpz_sc00047.1.g00360.1.am.mk 22 KGLWSPEEDERLFNQITMRGVSTWSSVAQLAGLRRSGKSCRLRWMNYL 69
                                  678*******************************************97 PP
2Myb_DNA-binding46.31e-1475118146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   +g+ ++ E+e+++ + + lG++ W++Ia++m+ gRt++++k++w++
  Zpz_sc00047.1.g00360.1.am.mk  75 KGPISKREEEIIISLQQSLGNR-WSAIAAKMP-GRTDNEIKNYWNS 118
                                   6788999***************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9341769IPR017930Myb domain
SuperFamilySSF466893.32E-2721116IPR009057Homeodomain-like
SMARTSM007178.3E-102171IPR001005SANT/Myb domain
PfamPF002495.4E-132269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-202376IPR009057Homeodomain-like
CDDcd001672.12E-82569No hitNo description
PROSITE profilePS5129422.59970124IPR017930Myb domain
SMARTSM007175.4E-1474122IPR001005SANT/Myb domain
PfamPF002491.1E-1275118IPR001005SANT/Myb domain
CDDcd001671.17E-1077117No hitNo description
Gene3DG3DSA:1.10.10.601.2E-2477124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MVRKPSQHDV DADCTGENKE RKGLWSPEED ERLFNQITMR GVSTWSSVAQ LAGLRRSGKS  60
CRLRWMNYLR PDLKKGPISK REEEIIISLQ QSLGNRWSAI AAKMPGRTDN EIKNYWNSRI  120
RKRLTAAKKA GSTTTNSAEE PSAPPAAGDE KEESTDNAGT AEATLPIPAR FPVFACQLLD  180
DSGAAALQSP TAATTTTEQQ NSSSEESKAS VGDGGEDAYH CSAAVGGGDN SIMAHDFLAF  240
DELEYQADLL VDLPGVMDAW ESELYSASSA NSMGSLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-252212427128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00047.1.g00360.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794385e-97HF679438.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB32 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817319.11e-108myb-related protein Hv33-like
TrEMBLA0A2T7DRN81e-107A0A2T7DRN8_9POAL; Uncharacterized protein
STRINGPavir.J24104.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP87032545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.12e-49myb domain protein 86