PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00045.1.g00150.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 172aa MW: 18737.2 Da PI: 8.2308

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00045.1.g00150.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	34.4	6.7e-11	36	82	1	49
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49 lppGf+F P+de+lvv++L++k+++ +++ ++i++v +++++Pw+L++ Zpz_sc00045.1.g00150.1.am.mk 36 LPPGFHFFPSDEDLVVHFLRRKAANVPCRP-DIIPTV-LHRYDPWELNA 82 79***********************999.778876.99*****83 PP
2	NAM	45.5	2.5e-14	83	136	74	128
NAM 74 knratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + r+ sg W+ g d++v++ +g vglkkt++f +g+ kg kt+Wvmhey+l Zpz_sc00045.1.g00150.1.am.mk 83 QGRTSPSGCWNPIGADETVTC-SGCSVGLKKTFIFCTGEPLKGFKTNWVMHEYHL 136 568889*************.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-34	31	143	IPR003441	NAC domain
PROSITE profile	PS51005	13.475	36	166	IPR003441	NAC domain
Pfam	PF02365	4.4E-16	37	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MRKANPKGGG WLGLETGWGS DEGRADHIRM GGATNLPPGF HFFPSDEDLV VHFLRRKAAN 60 VPCRPDIIPT VLHRYDPWEL NAQGRTSPSG CWNPIGADET VTCSGCSVGL KKTFIFCTGE 120 PLKGFKTNWV MHEYHLLDGG GYNASGGSTS GVQQLGDMPS LRIKLRRASE LP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-22	35	145	16	151	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-22	35	145	16	151	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-22	35	145	16	151	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-22	35	145	16	151	NO APICAL MERISTEM PROTEIN
3swm_A	1e-22	35	145	19	154	NAC domain-containing protein 19
3swm_B	1e-22	35	145	19	154	NAC domain-containing protein 19
3swm_C	1e-22	35	145	19	154	NAC domain-containing protein 19
3swm_D	1e-22	35	145	19	154	NAC domain-containing protein 19
3swp_A	1e-22	35	145	19	154	NAC domain-containing protein 19
3swp_B	1e-22	35	145	19	154	NAC domain-containing protein 19
3swp_C	1e-22	35	145	19	154	NAC domain-containing protein 19
3swp_D	1e-22	35	145	19	154	NAC domain-containing protein 19
4dul_A	1e-22	35	145	16	151	NAC domain-containing protein 19
4dul_B	1e-22	35	145	16	151	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00045.1.g00150.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021314570.1	1e-64	NAC domain-containing protein 104 isoform X2
TrEMBL	A0A0A9FYS5	7e-64	A0A0A9FYS5_ARUDO; Uncharacterized protein
STRING	Si018368m	1e-62	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3667	36	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-28	NAC domain containing protein 25