PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00043.1.g00590.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 445aa MW: 48297.2 Da PI: 9.8806 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.4e-17 | 177 | 224 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ ++k +G g+W++ ++ g+ R++k+c++rw +yl Zpz_sc00043.1.g00590.1.am.mk 177 KGAWTKEEDQRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 224 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3.2e-18 | 230 | 274 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++ ++++G++ W++Ia +++ gRt++++k++w+++ Zpz_sc00043.1.g00590.1.am.mk 230 RGNFTEEEDELIIKFHELFGNK-WSLIAGRLP-GRTDNEIKNYWNTH 274 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 9.7E-24 | 168 | 227 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.206 | 172 | 224 | IPR017930 | Myb domain |
SMART | SM00717 | 7.4E-14 | 176 | 226 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.94E-29 | 176 | 271 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.8E-15 | 177 | 224 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.91E-11 | 179 | 224 | No hit | No description |
PROSITE profile | PS51294 | 28.684 | 225 | 279 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-28 | 228 | 279 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.0E-18 | 229 | 277 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-16 | 230 | 274 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-13 | 232 | 275 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MAGWIIQSKR EGIGGNWCFF VTGGAGAEGA GKLVEEERRQ SGRFGSMQFR GAGGAAAGAL 60 TRPWSTTTCL APRSVAFHCV VWMVRWLAGL GRGLVGTQLS RSGVAGTCRI HGRPVWTKIT 120 SICVQGSRKA RPLQQHPGVI PRQSIPDLLL LLPGSIKALQ AAYMGRSPCC EQAHTNKGAW 180 TKEEDQRLIA YIKAHGEGCW RSLPKAAGLL RCGKSCRLRW INYLRPDLKR GNFTEEEDEL 240 IIKFHELFGN KWSLIAGRLP GRTDNEIKNY WNTHIKRKLL ARGIDPQTHR PVSATAAPAQ 300 PQQPHYQPPA QKPASPPGGH HHHQQPSQSP VACSHSSDEE PRPATSPPPR LLDIDLNLSI 360 SLAPYQPAEE SGDDKPLTLV PATTTTAEAG DINVVPVCRC LNSLGYRPGV ECVCGGPRRR 420 LLPAAEAVGS QQSSASNALL QRLIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 177 | 279 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00043.1.g00590.1.am.mk |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054758 | 1e-166 | BT054758.1 Zea mays full-length cDNA clone ZM_BFb0028G03 mRNA, complete cds. | |||
GenBank | KJ726796 | 1e-166 | KJ726796.1 Zea mays clone pUT2285 MYB transcription factor (MYB64) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826560.1 | 1e-130 | myb-related protein 308-like | ||||
Swissprot | Q9SZP1 | 4e-88 | MYB4_ARATH; Transcription repressor MYB4 | ||||
TrEMBL | A0A2S3ICU8 | 1e-129 | A0A2S3ICU8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ha00871.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 2e-85 | myb domain protein 4 |