PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00036.1.g01080.1.am.mkhc
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 322aa    MW: 35783.2 Da    PI: 10.0978
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00036.1.g01080.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.31.9e-093075347
                                    SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                                    +WT+ E +++ +a + l  g  +W+++ar ++ gRt  +++++++++
  Zpz_sc00036.1.g01080.1.am.mkhc 30 SWTAKENKQFERALAALDLGrpDWEKVARAIP-GRTVGEIVDHYRSL 75
                                    7**************9877777**********.***********975 PP

2Myb_DNA-binding47.63.8e-15145189347
                                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     +WT+eE+ l++ + k++G+g+W++I+r++  +Rt+ q+ s+ qky
  Zpz_sc00036.1.g01080.1.am.mkhc 145 PWTEEEHRLFLLGLKKYGKGDWRSISRYFVHTRTPTQVASHAQKY 189
                                     8*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.3292680IPR017884SANT domain
SMARTSM007174.5E-52778IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-52975IPR009057Homeodomain-like
PfamPF002495.3E-73075IPR001005SANT/Myb domain
CDDcd001671.05E-83075No hitNo description
SuperFamilySSF466893.66E-93083IPR009057Homeodomain-like
PROSITE profilePS5129419.812138194IPR017930Myb domain
SuperFamilySSF466896.28E-18139194IPR009057Homeodomain-like
TIGRFAMsTIGR015575.9E-17141192IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.4E-12142188IPR009057Homeodomain-like
SMARTSM007171.8E-13142192IPR001005SANT/Myb domain
CDDcd001672.38E-11145190No hitNo description
PfamPF002494.5E-13145189IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMREAYMEVL PAMDHYASRS NNWFLEPPRS WTAKENKQFE RALAALDLGR PDWEKVARAI  60
PGRTVGEIVD HYRSLEVDVQ RIESGAMMPF SGYGGGGGAN AFTLQWDGKG GHGAGDFRHG  120
HRFAGGCGKR HPGLTPEQER KKGVPWTEEE HRLFLLGLKK YGKGDWRSIS RYFVHTRTPT  180
QVASHAQKYF IRRNSGGKDK RRSSIHDITT VNLNNDQTPS PSQSSLITNQ PKASDQTAAA  240
SQFSLSADTK QHGSVNLPFS SPSWTPRMPA YGMGLQDQVG PAKQKPPTDG DTVVFLQKVL  300
VWHQAWSLAF ELLLPQASPS SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-132998978RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00036.1.g01080.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817822.11e-149transcription factor DIVARICATA-like
SwissprotQ8S9H72e-74DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA5HJS51e-161A5HJS5_9POAL; MYB_Al protein
STRINGSi002426m1e-141(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78863348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.19e-63Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]