PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00031.1.g01220.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 545aa    MW: 60053.4 Da    PI: 8.2166
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00031.1.g01220.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS873e-27379469252342
                            GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpls 330
                                      F +rf eal ++salfd+lea++pr++ +r+ +Er l+gre+ nv+aceg++r+er et+++W+ r  +aGF ++pls
  Zpz_sc00031.1.g01220.1.am.mkhc 379 FFITRFREALFHFSALFDMLEATVPRDDAQRALIERDLFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQAPLS 457
                                     699**************************************************************************** PP

                            GRAS 331 ekaakqaklllr 342
                                     +++ ++  l+ +
  Zpz_sc00031.1.g01220.1.am.mkhc 458 QDIHCDSGLICA 469
                                     **9998776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.584378481IPR005202Transcription factor GRAS
PfamPF035141.0E-24379469IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
LAGPGSGVAQ LLGCSAAARA LIFFPVCLLP LTRSFDPFRS WRRIDGPDGA TTLVPGPEKL  60
QPIVTHAPSP GTSRESGSGA GSHQTHHNHP QRRRRRSSGT FRSGSGASSR PTLRRRAASP  120
LKLRSASPLS TSAYSFLNSQ PEIVPQIATA PSSNPSSAIS RTNTETDNPE DWEFISDESL  180
NYISRMLMEE DIDEKVSMYQ AESAALHAAA KPFYDILGHK FPPSPDHQLI PWSLDSPVES  240
GNSSHAQSYA STATSSIGGA VDSNRRYDIG RSEQLELYGD LRVQSSLPVL EKKATVLREM  300
MRNEASKNSQ VTQTKAPSGP RQRGRKPTKR DVVDLRTILI QCAQAVAADD RRSAMAMPNQ  360
ASLQEGRWAA FIAYNCVPFF ITRFREALFH FSALFDMLEA TVPRDDAQRA LIERDLFGRE  420
ALNVIACEGS DRVERPETYK QWQVRNLRAG FVQAPLSQDI HCDSGLICAV SRNGFANEFA  480
PPQCGSFVRV QCTYMDLASI AREKRAVCGR DHVKRGRERG NKVDEDMDME PTGISCELRG  540
EEASW
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00031.1.g01220.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0611762e-73BT061176.1 Zea mays full-length cDNA clone ZM_BFb0119A04 mRNA, complete cds.
GenBankJX4285072e-73JX428507.1 Zea mays subsp. mays clone pUT3105 GRAS1 GRAS type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794111.11e-55scarecrow-like protein 9
TrEMBLA0A3L6S7Z01e-60A0A3L6S7Z0_PANMI; Scarecrow-like protein 9
STRINGPavir.J32327.1.p3e-66(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-34GRAS family protein