PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00031.1.g00070.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25381.5 Da PI: 4.8633 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.1 | 2e-40 | 54 | 153 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll++lpe+ r da+ss+vyeAear+rdPvyG++g + Zpz_sc00031.1.g00070.1.sm.mk 54 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNMIKLLQDLPESSRADAVSSMVYEAEARLRDPVYGCAGAVC 134 7******************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lq+q ++lk++la++++ Zpz_sc00031.1.g00070.1.sm.mk 135 RLQKQANELKVQLARAQAD 153 **************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.293 | 53 | 154 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.7E-40 | 54 | 151 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005739 | Cellular Component | mitochondrion |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MEYSNASTGM TAAEHYYRSM SPPSWESSSG SPSPSPPSAV QLVGNVAPTV VMSPCAACKI 60 LRRRCADGCV LAPYFPPTEP AKFTTAHRVF GASNMIKLLQ DLPESSRADA VSSMVYEAEA 120 RLRDPVYGCA GAVCRLQKQA NELKVQLARA QADLLNVQAQ HANLLALVCV EVANRRDSPQ 180 QEQQTTSTPL VMDDGGSCSD LGGAGYQMFY DSDLLDSATW PDHEAQLWTY EQRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-41 | 53 | 156 | 10 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-41 | 53 | 156 | 10 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00031.1.g00070.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072515 | 1e-152 | AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence. | |||
GenBank | CT832143 | 1e-152 | CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465424.1 | 1e-111 | LOB domain-containing protein 1 | ||||
Swissprot | Q9LQR0 | 2e-63 | LBD1_ARATH; LOB domain-containing protein 1 | ||||
TrEMBL | A0A2T7CE11 | 1e-111 | A0A2T7CE11_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib01336.1.p | 1e-112 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 2e-64 | LOB domain-containing protein 1 |