PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00029.1.g00810.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NF-YA
Protein Properties Length: 268aa    MW: 28712.6 Da    PI: 9.8161
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00029.1.g00810.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA52.71.4e-16198238142
                       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheS 42 
                                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k rk+    S
  Zpz_sc00029.1.g00810.1.sm.mkhc 198 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-VKVRKESKTPS 238
                                     69****************************.99999877766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.9E-9196254IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115216.75197232IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-12199239IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860202222IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MPSVVCLSRT ARPAFSFSSS LSAFIVRLRL TFLPCTTSER TWTGTIHAGG ATKTASCGQP  60
HMESRPGGTN LVEPRGQGAA VPPGGVAMQP WWTGGGLGAV SPAVVAPGIT PVGGADKAGD  120
DARGESSEES RRSGESKDGS ISQEKNHATS QSQMPALASA TYQYPDAYYA GMIGPYGTQP  180
GIPGLTHSRM PLPLEISEEP VYVNAKQYHG ILRRRQSRAK AELEKKVVKV RKESKTPSKS  240
MSLQTYIYGR GRHEVMIADW QMLCQPIH
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00029.1.g00810.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632634.12e-74nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632635.12e-74nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632636.12e-74nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632637.12e-74nuclear transcription factor Y subunit A-4 isoform X1
RefseqXP_015632638.11e-74nuclear transcription factor Y subunit A-9 isoform X2
TrEMBLA0A3L6TLH31e-75A0A3L6TLH3_PANMI; Nuclear transcription factor Y subunit A-1-like
STRINGOMERI03G25970.16e-74(Oryza meridionalis)
STRINGOS03T0696300-015e-74(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.17e-17nuclear factor Y, subunit A9