PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00029.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 348aa    MW: 37935.4 Da    PI: 6.0689
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00029.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox308.9e-102863182254
                                   SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                      Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                                   ++yps +e+ +LA ++gL+ +q+++WF N Ra+
  Zpz_sc00029.1.g00110.1.am.mk 286 HPYPSDSEKLRLAVSTGLSRSQISNWFINARAR 318
                                   89******************************9 PP
2BELL46.49.8e-161392061071
                          BELL  10 akLlslleeVdk......rYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 
                                   akLl ll eV +      r ++y  +l  v+ssFe + g g+a+ Ytsl ++a++rhF +L+ ai  +
  Zpz_sc00029.1.g00110.1.am.mk 139 AKLLGLLSEVSRarplesRQERYFGELGRVASSFEPALGPGAAAAYTSLMSQAMARHFDNLRRAILRR 206
                                   89999999985433333399*********************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-1076205IPR006563POX domain
PfamPF075261.0E-2181203IPR006563POX domain
PROSITE profilePS5007111.872259322IPR001356Homeobox domain
CDDcd000867.02E-13262323No hitNo description
SMARTSM003891.3E-10262326IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.1E-26267328IPR009057Homeodomain-like
SuperFamilySSF466891.58E-17268329IPR009057Homeodomain-like
PfamPF059201.4E-17279318IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSTQHHEKGS PNPGDRSSSQ PPLQLEHCIR CDEHGCQGDG LKGAGSPLVL TLGPLGSAAD  60
RPCCCCSCGA APGPTPETVA VLRGSRYLRP AQELLSEAVR VSDDLDGDGE EAEQHERLDA  120
GARRAMRGAA RSGADGVQAK LLGLLSEVSR ARPLESRQER YFGELGRVAS SFEPALGPGA  180
AAAYTSLMSQ AMARHFDNLR RAILRRLRLH AAARRRRAAS LQEAVTDEEE DDDDEEPVTD  240
EKVDRVARRT KLAAAARAEQ AWRPLRGLPE GSLAVLRAWL FDHFLHPYPS DSEKLRLAVS  300
TGLSRSQISN WFINARARLW KPMIEEMYNE EFCEDDPLSN STSGASSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A5e-17268326563Homeobox protein Meis2
4xrm_B5e-17268326563Homeobox protein Meis2
5bng_A6e-17268326159Homeobox protein Meis2
5bng_B6e-17268326159Homeobox protein Meis2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1205216RLRLHAAARRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00029.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022678610.11e-108BEL1-like homeodomain protein 10 isoform X1
RefseqXP_022678611.11e-108BEL1-like homeodomain protein 10 isoform X1
RefseqXP_022678612.11e-108BEL1-like homeodomain protein 10 isoform X1
TrEMBLA0A2T7C2N21e-101A0A2T7C2N2_9POAL; Uncharacterized protein
STRINGPavir.Ia00979.1.p1e-105(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.22e-35BEL1-like homeodomain 6