PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00028.1.g00280.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 398aa MW: 43824.7 Da PI: 6.8486 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.2e-16 | 107 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l++ + ++G g+W+++++ g+ R++k+c++rw +yl Zpz_sc00028.1.g00280.1.am.mk 107 RGLWSPEEDEKLYNHIIRYGVGCWSSVPKLAGLERCGKSCRLRWINYL 154 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.4 | 4.4e-15 | 160 | 203 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E++l++ +k lG++ W+ Ia+ ++ gRt++++k++w++ Zpz_sc00028.1.g00280.1.am.mk 160 RGSFSQQEEDLIISFHKILGNR-WSQIASQLP-GRTDNEIKNFWNS 203 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.7E-23 | 102 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.594 | 102 | 158 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.98E-28 | 104 | 201 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-13 | 106 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.4E-14 | 107 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.13E-11 | 110 | 154 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 158 | 209 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-14 | 159 | 207 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.651 | 159 | 209 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.2E-13 | 160 | 203 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.61E-10 | 162 | 202 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MGSHGWGGLG RVSGHYCTQQ CREGETGHHG GDGWNCKSTV PAARRIGRAS LVNTIDGAGK 60 ETTTRLKRTT VVGQHQRSQL ACVARLPCLP EESMGREAEA GRPKLRRGLW SPEEDEKLYN 120 HIIRYGVGCW SSVPKLAGLE RCGKSCRLRW INYLRPDLKR GSFSQQEEDL IISFHKILGN 180 RWSQIASQLP GRTDNEIKNF WNSCIKKKLR QQGIDPSTHK PINEDAAEPS DECKQLPTDE 240 HCLPIAAAAS DPLAPHSPAV SFDPLSVTNA PAMQPSYGAA HSFRSDNLCD YNLSDAATYS 300 AYNGGGDSSS NSNSAWTCGN VIGGEPMPHM DIFGRDVEPY SFDPAKFSPW NHQQQQHHHH 360 DADAAAGFPI RSTSRDLPES CFDLARGALE DEFSVDFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-30 | 101 | 209 | 1 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00028.1.g00280.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP092593 | 1e-161 | FP092593.1 Phyllostachys edulis cDNA clone: bphylf046j05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004968898.1 | 1e-171 | myb-related protein Hv33 | ||||
Refseq | XP_004968899.1 | 1e-171 | myb-related protein Hv33 | ||||
TrEMBL | K3XJZ7 | 1e-169 | K3XJZ7_SETIT; Uncharacterized protein | ||||
STRING | Si002220m | 1e-170 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11164 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26660.1 | 9e-72 | myb domain protein 86 |