PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zpz_sc00022.1.g00700.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 414aa MW: 45029.8 Da PI: 6.9553 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 35.5 | 2.3e-11 | 55 | 123 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....................TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....................kgRtlkqcksrwqkyl 48 rg+W +Ed+ lv++v+ +G g+W++ a+ g ++Rt+k+c++rw++yl Zpz_sc00022.1.g00700.1.am.mk 55 RGPWMVDEDLALVNYVAAHGEGRWNSLAAAAGtyvlafslcfsslanaaiytgLKRTGKSCRLRWLNYL 123 89********************9999999999999999999999999999*****************97 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 129 | 172 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T++E+ l++d++ ++G++ W++Ia++++ gRt++++k++w++ Zpz_sc00022.1.g00700.1.am.mk 129 RGNFTADEQMLILDLHSRYGNR-WSKIAQHLP-GRTDNEIKNYWRT 172 89********************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 9.547 | 50 | 123 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.5E-8 | 54 | 125 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.01E-25 | 54 | 170 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.6E-11 | 55 | 123 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 56 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.45E-7 | 57 | 123 | No hit | No description |
PROSITE profile | PS51294 | 23.832 | 124 | 178 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-16 | 128 | 176 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-16 | 129 | 172 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-25 | 131 | 177 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.33E-13 | 131 | 172 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 414 aa Download sequence Send to blast |
MLNRSTSNSN MASSPHSCHS ATAPAPTTDA LFARSSGVAV DVDGGAGQKD QLIRRGPWMV 60 DEDLALVNYV AAHGEGRWNS LAAAAGTYVL AFSLCFSSLA NAAIYTGLKR TGKSCRLRWL 120 NYLRPDVKRG NFTADEQMLI LDLHSRYGNR WSKIAQHLPG RTDNEIKNYW RTRVQKHAKQ 180 LNCDANSKRF KDAMRYLWMP HLVDGHRHHL HAADHQQKAT ATAANHDGYY HAAAALSAGA 240 MGVPSSSSDS FATTTSESYE YDAGFPPNWE PSSCYDSAAA GGLYAGEMLV PGGGGDCWVQ 300 ETSQQQAGMM WPEEQKAALG VNGGQFEDAE LSGWVQSFSE AGATAENNSF WTLEDRAASD 360 RARYERPGPA HHGLSSRERR LPVPGQTFGG VAVDPSPWAS STVNKDVLFR TEVA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-21 | 52 | 176 | 1 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 5e-21 | 52 | 176 | 1 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Zpz_sc00022.1.g00700.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT069744 | 1e-109 | BT069744.1 Zea mays full-length cDNA clone ZM_BFb0226N11 mRNA, complete cds. | |||
GenBank | KJ727638 | 1e-109 | KJ727638.1 Zea mays clone pUT5565 MYB transcription factor (MYB100) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962755.1 | 1e-106 | transcription factor JAMYB | ||||
TrEMBL | K3Z8G1 | 1e-105 | K3Z8G1_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Cb00499.1.p | 1e-108 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G48000.1 | 7e-69 | myb domain protein 112 |