PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00022.1.g00280.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 342aa MW: 39627.1 Da PI: 10.502 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.3 | 2e-14 | 4 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd l +v+q+G++ W++++++m+ + R +k+c +rw +yl Zpz_sc00022.1.g00280.1.sm.mk 4 RQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNvaLDRDAKSCLERWKNYL 53 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 36.5 | 1.1e-11 | 59 | 103 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + Zpz_sc00022.1.g00280.1.sm.mk 59 KGSLTEEEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788******************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.82 | 1 | 53 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-11 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.01E-21 | 4 | 98 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.62E-7 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 6 | 60 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.3E-13 | 7 | 68 | No hit | No description |
PROSITE profile | PS51294 | 23.375 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-10 | 58 | 106 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-15 | 61 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.79E-6 | 63 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MKERQRWRPE EDAVLRAYVR QYGPREWHLV SQRMNVALDR DAKSCLERWK NYLRPGIKKG 60 SLTEEEQRLV IRLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE LRGSRRPPPE 120 PSPDERGRYE WLLENFAEKL VNERLQPTPL LMAAPVLPPW LSSSATRHTV VTQPPSPSVT 180 LSLASAPTPP ATVPPWMPAE RGAAADAFGF TTPQPPPAGA PTXXXXCREL EEGQRAWAAH 240 RREAAWRLRR VEQQLEAERE ARRREVWEEF EAKKRAVRGE QAAAAERLER EYREKEAELR 300 RDAQAKEEKM AEQWAAKHAR VAKFLEQVGG CHPRPWSSAE MN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 5e-15 | 7 | 101 | 7 | 98 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-15 | 7 | 101 | 7 | 98 | C-Myb DNA-Binding Domain |
1msf_C | 6e-15 | 7 | 101 | 7 | 98 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. Interacts directly with asymmetric leaves 2 (AS2) to repress the knox homeobox genes. {ECO:0000269|PubMed:10102816, ECO:0000269|PubMed:12750468, ECO:0000269|PubMed:9655808}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00022.1.g00280.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF126489 | 0.0 | AF126489.1 Zea mays rough sheath2 protein (rs2) gene, complete cds. | |||
GenBank | AF143447 | 0.0 | AF143447.1 Zea mays rough sheath 2 (rs2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182147.1 | 1e-152 | protein rough sheath 2 | ||||
Swissprot | Q9S7B2 | 1e-150 | RS2_MAIZE; Protein rough sheath 2 | ||||
TrEMBL | A0A3B6LHD0 | 1e-151 | A0A3B6LHD0_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446TY02 | 1e-151 | A0A446TY02_TRITD; Uncharacterized protein | ||||
STRING | Traes_5BS_E635B0A281.2 | 1e-152 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 3e-82 | MYB family protein |