PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00020.1.g01070.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 402aa    MW: 42983.6 Da    PI: 4.5106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00020.1.g01070.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1957106255
                           AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Zpz_sc00020.1.g01070.1.am.mk  57 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 106
                                   789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.28E-2956113No hitNo description
SMARTSM003804.6E-3557120IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-1957114IPR016177DNA-binding domain
PROSITE profilePS5103219.55957114IPR001471AP2/ERF domain
PfamPF008479.9E-1457106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-2757113IPR001471AP2/ERF domain
PRINTSPR003675.8E-85869IPR001471AP2/ERF domain
PRINTSPR003675.8E-88096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MARKRKAFDA VADIDGGGDA LSPPPSLVST DACAWSLGGR VAAVVAASAQ QQRGRKRFVG  60
VRQRPSGRWV AEIKDTIQKI RVWLGTFDTA EEAARAYDEA ACLLRGANTR TNFWPRPSPP  120
ILTAAAAHPM TPTAHVTNLT LALPPKVTNL LLLRLRAHNQ QLLNATAAQH QVQAALLQGA  180
SCQEAYDGEE CGFQVDDYLS YDCGSDADAT SSQEMDDDEE AAEEEELDFR FMDAAHAASP  240
VADGSDFGLC SPFEALAAEL GGSLTNADVD GEPETAVRDM MRRIDYERKF SASLYALHGV  300
SECLKMRLGS TGAGVRDQLS GLREACRKKR HEAVVAVQQQ HREQEPAAEK AEDGKAVQET  360
CSSSAGSSGD DAETEVARAS SEASGVDEGD VLWSSLDLGP IC
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00020.1.g01070.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126202e-97CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809285.11e-130ethylene-responsive transcription factor ERF118-like
TrEMBLA0A1E5WFR21e-142A0A1E5WFR2_9POAL; Uncharacterized protein
STRINGPavir.Cb00448.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-21related to AP2 11