PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00018.1.g00560.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | LSD | ||||||||
Protein Properties | Length: 131aa MW: 13639 Da PI: 8.5914 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 39.4 | 1e-12 | 37 | 61 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ Zpz_sc00018.1.g00560.1.am.mkhc 37 CRGCRTVLLYPQGAPSVCCAVCQAI 61 9**********************97 PP | |||||||
2 | zf-LSD1 | 23.4 | 1e-07 | 76 | 89 | 1 | 14 |
zf-LSD1 1 CggCrtlLsYPrGA 14 CggCrtlL+Y+r+A Zpz_sc00018.1.g00560.1.am.mkhc 76 CGGCRTLLMYTRNA 89 ************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 6.5E-12 | 34 | 64 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.5E-11 | 37 | 61 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.4E-7 | 73 | 89 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.5E-5 | 76 | 89 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MIDLLIGFGA GVPARTVRRR SGGVVAFASC MENQIVCRGC RTVLLYPQGA PSVCCAVCQA 60 ITTVPPPGLE MAQLICGGCR TLLMYTRNAD TPKTQPQNVT VVVENPMTVD EKGKLVSNVA 120 VGVTAGSAGK N |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00018.1.g00560.1.am.mkhc |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982348.1 | 3e-35 | protein LOL3 | ||||
TrEMBL | A0A0E0KGN6 | 3e-50 | A0A0E0KGN6_ORYPU; Uncharacterized protein | ||||
STRING | OMERI03G23730.1 | 3e-37 | (Oryza meridionalis) | ||||
STRING | OMERI12G13090.1 | 4e-37 | (Oryza meridionalis) | ||||
STRING | ORUFI12G20660.2 | 4e-37 | (Oryza rufipogon) | ||||
STRING | OPUNC12G16710.1 | 4e-37 | (Oryza punctata) | ||||
STRING | Si037185m | 5e-37 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1347 | 38 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 8e-27 | lsd one like 1 |