PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00017.1.g00960.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 253aa    MW: 27162.6 Da    PI: 10.2233
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00017.1.g00960.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP268.21.5e-21127176255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +grW+AeIrdp     + +r++lg+fgt+eeAa+a++aa+++++g
  Zpz_sc00017.1.g00960.1.am.mk 127 QYRGVRRRP-WGRWAAEIRDPA----KaARVWLGTFGTPEEAARAYDAAARRFRG 176
                                   69*******.**********83....36************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.78E-18126186No hitNo description
PROSITE profilePS5103225.159127184IPR001471AP2/ERF domain
PfamPF008475.5E-15127176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-31127185IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-22127185IPR016177DNA-binding domain
SMARTSM003802.9E-35127190IPR001471AP2/ERF domain
PRINTSPR003674.5E-11128139IPR001471AP2/ERF domain
PRINTSPR003674.5E-11150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MSISVFQIAT ATNGQATAAA LSASAWIDVN GGGMARKRAL PDDLPGEEPA AVAEEQRRGD  60
HGFLAHRYYS AARAEHDVAV VTAALTQVVS ATAPPSRDEA AAVPAPRLLV EQVCPRGREE  120
VPPVRAQYRG VRRRPWGRWA AEIRDPAKAA RVWLGTFGTP EEAARAYDAA ARRFRGVKAK  180
LNFPTATPLV VPSSPGHEQQ ATVSSSSWMA PSTEFADLRR YAHILMSTGE DGSSSQVADT  240
RFPILKRLPA SRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20127184563ATERF1
3gcc_A6e-20127184563ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00017.1.g00960.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278397e-56KJ727839.1 Zea mays clone pUT5792 AP2-EREBP transcription factor (EREB116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652886.14e-38ethylene-responsive transcription factor 11
TrEMBLA0A1E5V4L24e-41A0A1E5V4L2_9POAL; Uncharacterized protein
STRINGGRMZM2G131281_P011e-37(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP164421013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.16e-22ERF family protein