PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00017.1.g00700.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family SBP
Protein Properties Length: 974aa    MW: 104511 Da    PI: 9.7582
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00017.1.g00700.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.11.7e-40182258278
                                   -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                           SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                   C v+gC+adls+++eyhrrhkvCe+hsk+pvv+v+g+e rfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
  Zpz_sc00017.1.g00700.1.am.mk 182 CAVDGCDADLSKCREYHRRHKVCEAHSKTPVVVVAGREMRFCQQCSRFHSLVEFDEAKRSCRKRLDGHNRRRRKPQP 258
                                   **************************************************************************987 PP
2SRF-TF93.78.4e-30897947151
                                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                        SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                                   k+ienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gkl+e++s
  Zpz_sc00017.1.g00700.1.am.mk 897 KQIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFCS 947
                                   68***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-34174243IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.129179256IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.22E-37180261IPR004333Transcription factor, SBP-box
PfamPF031101.3E-30182255IPR004333Transcription factor, SBP-box
SMARTSM004327.0E-39889948IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.212889949IPR002100Transcription factor, MADS-box
CDDcd002651.05E-36890947No hitNo description
SuperFamilySSF554552.88E-28890951IPR002100Transcription factor, MADS-box
PROSITE patternPS003500891945IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-30891911IPR002100Transcription factor, MADS-box
PfamPF003198.8E-25899945IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-30911926IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-30926947IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MPLLKGEHGP GAPLGPSPLE SLQPSTSRKL CICCASSISL ASSLSLRALC SAQGTLVSLG  60
GLMDWDLKMP VSWDLAELEH DAVPAISAPT APVAAATSGI ATAAAAARGT PTRAECSVDL  120
KLGGLGDFGA AEVTKELKPP AKGPAVTVSS PPAAPAVVPS ASPLKRPRTG PGGANGPQCP  180
SCAVDGCDAD LSKCREYHRR HKVCEAHSKT PVVVVAGREM RFCQQCSRFH SLVEFDEAKR  240
SCRKRLDGHN RRRRKPQPDD MNARSFMTSQ QGPRLSSFVT PRPEPSWSGV MKLEDSSYSA  300
HQVLCNRPHF AGSTSTYSKE GRRFPFLQDG DQLSFGTGGA ASLEAATACQ SLLKTVAAPE  360
SSSSNKIFSP DRLTSVLDSD CALSLLSSSA NSSSVDVSRM VQPTEHIPMA QPLVPSMQQF  420
GSSPSWFSQA ASSGVVVSTA GFTCPSMDSE QLNPVLVPSS DGHEMNYHGI FHVGGEGSYD  480
GTSSSLPFSW HFDRRLLSSM AEFLFARPTL HSYHPCWIRN ASVFARSRRT AGRGWAVGWY  540
RLSARQDDSH ANLSAPIASR GRAGGRQGTK FCLARPGARR GRADKASEHG KMSVLGVQAS  600
KVEWHVTSGC AEQPPRATGR PPDLGIVDRH VVKLMTGSCR VRAPYDVAPH PAIPPPTARV  660
RARYPADAAG GPSNRWFRTA DDGVRVHNLG LAPLAEGWRE VSVLYSLVPL MTTEKPSRLT  720
LTGELRPVCS NCGNQSLASS RAEPERQPRR PVAGLEEAGN DAAHGKRKGG VAQIYDSTRG  780
RVDVRADHET GLGFRPLGFR VAHHLTRNGK ERSAPITPPP SRPAFTTPRR PAISTQRTSP  840
ALTSSVPHSS PPSLPLCVCC FAWREACLLL TSVGSRLAAT PAREEARAMG RGRVELKQIE  900
NKINRQVTFA KRRNGLLKKA YELSVLCDAE VALIIFSNRG KLFEFCSGQR YTAAYTHAAY  960
LRNEEMPVVG AADR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27170255184squamosa promoter binding protein-like 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238255KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00017.1.g00700.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0538757e-93BT053875.1 Zea mays full-length cDNA clone ZM_BFb0379K14 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.17e-44SBP family protein