PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00016.1.g01380.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 565aa MW: 61548.5 Da PI: 9.8967 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.9 | 1.8e-34 | 207 | 325 | 1 | 89 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec... 73 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+ +ak+ai+e+++ a+++ Zpz_sc00016.1.g01380.1.am.mk 207 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIHNAKAAIDEIPDRpeateA---AKAAaea 284 689**************************************************************553331...2111211 PP TCP 74 .eaesssssasnsssg............................k 89 e+++++ s+s k Zpz_sc00016.1.g01380.1.am.mk 285 tEQGEQVTSTS----YgfgsnpggavtgvaggslvqhsagadgvK 325 23333333333....134445555666666666665433333330 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.5E-32 | 209 | 320 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 31.678 | 210 | 268 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 565 aa Download sequence Send to blast |
MAVSSTAKAL LSSAVGRIFP FSRYGDSGHP SLSFAPQPRT GSEAEFAPES MHKWIPEPRY 60 PNRSRGVQVA SEREKISFAA TLSRAVIALF SFPFDSPLLP LPFRLWGVQV RSLKLEEDKN 120 QLSKGLDPWS NNPTATTSTL HYLLQEKERE QLQIYHQQGF SSYLQHHRRQ QQQSRGGSGG 180 DGISSGESTP VDALTAAFGS GRIVRSAAGR KDRHSKVCTA RGLRDRRVRL AAHTAIRFYD 240 VQDRLGYDRP SKAVDWLIHN AKAAIDEIPD RPEATEAAKA AAEATEQGEQ VTSTSYGFGS 300 NPGGAVTGVA GGSLVQHSAG ADGVKSLFPS SSTASTTPTH DEQYRCSPPD LLSRTTTSSQ 360 PQELCLTLQS NQHPIFSHVS SNHHGIISGA GVPGWPEHNQ RMPSWHASEN NMGDGHGGGN 420 GETYMFSMQP RQGLDQIQWQ LDFCPYLARP PSRNTTAVGN GWAAPPLNNF ARAEPPCSMR 480 RGPAALPPDY SPHHYRLALS LRRRIKHRSR VDIKFQNSDR ETRGTPRGRA MHTYVGSKQN 540 SPLCRAPGAG ADGGEMHAAG STARP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 5e-19 | 215 | 269 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 5e-19 | 215 | 269 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00016.1.g01380.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972119 | 1e-122 | EU972119.1 Zea mays clone 375445 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004972181.1 | 1e-173 | transcription factor PCF7 | ||||
Swissprot | Q8LT05 | 1e-137 | PCF7_ORYSJ; Transcription factor PCF7 | ||||
TrEMBL | A0A368RB94 | 1e-172 | A0A368RB94_SETIT; Uncharacterized protein | ||||
STRING | Pavir.Eb03208.1.p | 1e-164 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12056 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-32 | TCP family protein |