PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00016.1.g00750.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HB-PHD
Protein Properties Length: 1036aa    MW: 114433 Da    PI: 7.3575
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00016.1.g00750.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-076406731245
                                     HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHH CS
                        Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVk 45 
                                      + L+++Fekn+yps++++e LA++lgLt  qV 
  Zpz_sc00016.1.g00750.1.sm.mkhc 640 KQKLKDHFEKNPYPSRATKESLARELGLTFIQVA 673
                                     689**************************88885 PP
2Homeobox291.8e-098639031252
                                     HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                        Homeobox  12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                                      + L+  F k++yps+++ + LA++lgLt  qV+ WF+  R
  Zpz_sc00016.1.g00750.1.sm.mkhc 863 NQKLKVQFGKDPYPSRSTLQSLAQELGLTSIQVRRWFKSTR 903
                                     578999*******************************8766 PP
3PHD445.1e-15321376151
                                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                                     +C++Cg+   + +++++lCdg C++ fH++Cl+++l++e++p g   w+C+ C +k
  Zpz_sc00016.1.g00750.1.sm.mkhc 321 FCAICGSkdVTLQNDIILCDGaCDRGFHQNCLNPPLRTEDIPLGdeGWFCPACACK 376
                                     7******64445********66********************9999*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579035.54E-16311380IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.7E-15317376IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.226319376IPR019787Zinc finger, PHD-finger
PfamPF006283.0E-12321375IPR019787Zinc finger, PHD-finger
SMARTSM002494.4E-12321374IPR001965Zinc finger, PHD-type
CDDcd155041.87E-26321373No hitNo description
PROSITE patternPS013590322373IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.7E-9620687IPR009057Homeodomain-like
PROSITE profilePS5007110.268626697IPR001356Homeobox domain
SMARTSM003894.2E-8629701IPR001356Homeobox domain
SuperFamilySSF466894.71E-8633673IPR009057Homeodomain-like
CDDcd000862.13E-9633695No hitNo description
PfamPF059201.8E-5649691IPR008422Homeobox KN domain
Gene3DG3DSA:1.10.10.602.5E-9844903IPR009057Homeodomain-like
PROSITE profilePS5007112.455849903IPR001356Homeobox domain
SuperFamilySSF466892.35E-9850905IPR009057Homeodomain-like
SMARTSM003898.3E-9851913IPR001356Homeobox domain
CDDcd000867.83E-9852903No hitNo description
PfamPF000465.7E-7863903IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1036 aa     Download sequence    Send to blast
SRESRRKRKG VRKLLNRREG RLRLAAPSTG GEQAANGRQR VTPSKVGSPN NSVRMLRSAS  60
KNMDEFLNGN TAGEQVTNGR KCVTPSKVVS PNNSARVLRS ASKNKNEAYS ELLNGGTAGQ  120
PSAVKRKSGS PLKVGSPANS ARVLRSNSKK TIESCNEPLN DSTAAHPASR KRKTGTPPKE  180
GSPKLGVRVL RSASKKDACF EPQILSTPVQ PAVRKRKSGR SAKECSPKKD YIKFYNRVRY  240
ILNQMKYEQS LILAYDGEGW KGQSLEKIRP EKELERAKAA ILQWKIKIRE AFWNMDTLLS  300
EGKHEESLFD SAGEIFSEDI FCAICGSKDV TLQNDIILCD GACDRGFHQN CLNPPLRTED  360
IPLGDEGWFC PACACKLNCI VALNELQGSE LSVHDSWEKI FPEAASSAND SKQLDASVLP  420
LCDPENNDYS RSLVEGHIVN EGRFSAKNDG KVDDLGLPSE DSEDDDFDPA GLDSSEDQKG  480
ELHSEESDFT SDSDEFCVEI AKYFGQDGTS VSPLSNFNEK NWNRASMETE LDQDVVLPIS  540
SRRKVERLDY KKLYDEAYGE ESSSSSDDEE WSGKEKLEDS ETYGSVRSAK RRSGRPSAGD  600
PISQHTPPSQ RHYASASEQH TEVRSNGSNS ASRRFGPIIK QKLKDHFEKN PYPSRATKES  660
LARELGLTFI QVATPDLFFY LQVDKWFAST RHSSRVAAAK KEKCTGNRTT ENNDGVTVDR  720
AQVRAPNNAM LAERTAGRND MVHEEVMVQN NLDGGNKEDI LLPRAETETG GYENESSDPS  780
DEKEWSGTSA SQKELQDNET DSRATSNRTK RLARRAPVQP QNNEHTPLSE QLHGSVKEQL  840
TEAPCSNGSS SKARKYHFGP IANQKLKVQF GKDPYPSRST LQSLAQELGL TSIQVRRWFK  900
STRHYSGISA AKKGNNEKNG STTVDSIQGM ENTYGVMENP NKDRNDMVSR NLMLQINLNE  960
GSIDDIFLSQ HPSSEERVVT TPTALSRELG PPGYGPGESQ GKSALWNTGF EQGLITTPPA  1020
VSKDVVLPGY GPGESH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173SRKRKT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00016.1.g00750.1.sm.mkhc
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814926.10.0uncharacterized protein LOC112892070 isoform X2
SwissprotQ8H9910.0HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLA0A2T7DGV40.0A0A2T7DGV4_9POAL; Uncharacterized protein
STRINGPavir.Eb03127.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.15e-74Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]