PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00015.1.g00220.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 473aa MW: 51197.8 Da PI: 4.556 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.7 | 6.9e-19 | 60 | 109 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ GVr+++ +grWvAeI+d ++ r++lg+f+taeeAa+a+++a+ l+g Zpz_sc00015.1.g00220.1.sm.mk 60 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 109 789******.7*********33....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.559 | 60 | 117 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-35 | 60 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-27 | 60 | 116 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.38E-19 | 60 | 117 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.2E-13 | 60 | 109 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.7E-8 | 61 | 72 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.16E-28 | 61 | 116 | No hit | No description |
PRINTS | PR00367 | 7.7E-8 | 83 | 99 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 473 aa Download sequence Send to blast |
MARKRKAFDA LGDIDGGEDA LNPPPSLVST MDACTWSSGG SMVAAVAVAA RQQQQRGRKR 60 FVGVRQRPSG RWVAEIKDTI QKIRVWLGTF DTAEEAARAY DEAACLLRGA NTRTNFWPRP 120 SQAVAAHPVV PPAHVPTTPA LPPKVTNLLL LRLRARNQQL LNATAAQQEA AMLPRGQSCH 180 EAYGGDGEEC GFQVDDYLSH DCGSDGTGSS LEMEDEEAEE EEKELDFQFM DAHVASPVAT 240 GIECSPFEVM AAELGSSVVD AEDGEPATAV QELIRRIDYE RKVSASLYAL NGVSECLKMR 300 LGSTSAGAAM RDQLSGLREA CRKKQHEAVP AQQQHQEQEP AAETALDREA DPLYSGNYQQ 360 IEALASECLD QAFGEQVQML PAEDHEPAPT DRSDSALYLR RTEETDAEPV ERARGETLGR 420 CVSVSGEDSA GEVRAELLHG AHGAPEHALA AATIVRVRVE ESRGRRGITA EAE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00015.1.g00220.1.sm.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067109 | 1e-95 | BT067109.1 Zea mays full-length cDNA clone ZM_BFb0192O05 mRNA, complete cds. | |||
GenBank | JX469920 | 1e-95 | JX469920.1 Zea mays subsp. mays clone UT3176 AP2-EREBP-type transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025809285.1 | 1e-124 | ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A1E5WFR2 | 1e-139 | A0A1E5WFR2_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Cb00448.1.p | 1e-121 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-16 | related to AP2 11 |