PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00013.1.g00490.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 201aa    MW: 22923.6 Da    PI: 8.7165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00013.1.g00490.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.3e-18449147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg W + Ede+l+++v+++G+++W++Ia+++  gR++k+c++rw++ 
  Zpz_sc00013.1.g00490.1.am.mk  4 RGHWRPSEDEKLKELVALYGPHNWNAIAEKLK-GRSGKSCRLRWFNQ 49
                                  899****************************9.***********996 PP
2Myb_DNA-binding52.11.5e-165699146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  r ++++eE+ell+  ++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Zpz_sc00013.1.g00490.1.am.mk 56 RSPFSEEEEELLLASHRVHGNR-WAVIARFFP-GRTDNAVKNHWHV 99
                                  789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.906154IPR017930Myb domain
SMARTSM007172.1E-15352IPR001005SANT/Myb domain
PfamPF002491.5E-17449IPR001005SANT/Myb domain
SuperFamilySSF466891.83E-29497IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-26557IPR009057Homeodomain-like
CDDcd001673.10E-14748No hitNo description
PROSITE profilePS5129419.73555105IPR017930Myb domain
SMARTSM007174.1E-1555103IPR001005SANT/Myb domain
PfamPF002497.8E-145698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2058104IPR009057Homeodomain-like
CDDcd001674.12E-67198No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MCTRGHWRPS EDEKLKELVA LYGPHNWNAI AEKLKGRSGK SCRLRWFNQL DPRINRSPFS  60
EEEEELLLAS HRVHGNRWAV IARFFPGRTD NAVKNHWHVI MARRCRERAR MSNRPQCGAA  120
AGTTMENDNT CRNAKKPRPD DANCLASLGD KHRSEFTVNA TSSDTKCGSS IEDQDENRDD  180
QAEGHVQFID FLKVGAASHR L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-3421055108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that confers sensitivity to abscisic acid (ABA) and salt, but tolerance to drought (PubMed:21399993). Regulates secondary cell wall (SCW) biosynthesis, especially in interfascicular and xylary fibers (PubMed:18952777, PubMed:23781226). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:23781226}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00013.1.g00490.1.am.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (PubMed:16463103, PubMed:21399993). Accumulates in response to salt (PubMed:21399993). Triggered by MYB46 and MYB83 in the regulation of secondary cell wall biosynthesis (PubMed:19674407, PubMed:22197883). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19674407, ECO:0000269|PubMed:21399993, ECO:0000269|PubMed:22197883}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794181e-136HF679418.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB12 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644561.11e-103transcription factor MYB52 isoform X3
SwissprotQ6R0C44e-70MYB52_ARATH; Transcription factor MYB52
TrEMBLA0A060D7S31e-102A0A060D7S3_MAIZE; MYB transcription factor (Fragment)
STRINGGRMZM2G455869_P011e-103(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.11e-66myb domain protein 52
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cassan-Wang H, et al.
    Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis.
    Front Plant Sci, 2013. 4: p. 189
    [PMID:23781226]
  3. Shi D, et al.
    MYB52 Negatively Regulates Pectin Demethylesterification in Seed Coat Mucilage.
    Plant Physiol., 2018. 176(4): p. 2737-2749
    [PMID:29440562]