PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00012.1.g00620.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 428aa    MW: 46791 Da    PI: 6.1461
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00012.1.g00620.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.7e-1246102155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   s y+GV++++++gr++A+++d  s+n  ++k+   g ++ ++ Aa+a++ a++k++g
  Zpz_sc00012.1.g00620.1.am.mk  46 SIYRGVTRHRWTGRFEAHLWDkNSWNEtQNKKGKQGAYDDEDAAARAYDLAALKYWG 102
                                   57*******************8888889785555599***99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-1546112IPR016177DNA-binding domain
PfamPF008472.0E-846102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-1247111IPR001471AP2/ERF domain
PROSITE profilePS5103218.83447110IPR001471AP2/ERF domain
SMARTSM003806.5E-2047116IPR001471AP2/ERF domain
PRINTSPR003671.3E-54859IPR001471AP2/ERF domain
PRINTSPR003671.3E-592112IPR001471AP2/ERF domain
PROSITE profilePS5103210.231128245IPR001471AP2/ERF domain
CDDcd000185.66E-11135247No hitNo description
SMARTSM003805.6E-5135251IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-5220247IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-6220246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MAKPRKNSAA AAANSNSTAA GDVGVRVKPK RTRKSVPREA PSQRSSIYRG VTRHRWTGRF  60
EAHLWDKNSW NETQNKKGKQ GAYDDEDAAA RAYDLAALKY WGPDTILNFP ASVYEEELKE  120
MEGQSREEYI GSLRRHHHNG RWEARIGRVF GNKYLYLGTY EVSGMNVGMI QTEAVGEEWQ  180
EAAPYFDLSE VDTGIPIDSS TKRPKSKGIP VQRRNVRAAT QEEAAMAYDM AAIEYRGLNA  240
VTNFDLSRYI KWLRPGADSV AAAAAQNPHP MLGGLVQELT PVDIDGVAFQ HDDHRNQGTE  300
AHFPLPLKTS LGHTPTTSAL SLLLQSPKFK EMIALTTAAE SSTTSSSSPP TPSPPRPSPS  360
PPPLQAQVTN DGSDASPQCS FPDDIQTFFG CEDVAGVGVG VGYTDVDGLF FGDLAAYASP  420
AFHFELDL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00012.1.g00620.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0396321e-125BT039632.1 Zea mays full-length cDNA clone ZM_BFc0035F11 mRNA, complete cds.
GenBankBT0551111e-125BT055111.1 Zea mays full-length cDNA clone ZM_BFc0006C10 mRNA, complete cds.
GenBankKJ7275881e-125KJ727588.1 Zea mays clone pUT5448 AP2-EREBP transcription factor (EREB143) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015696557.11e-161PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN46e-64AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0D9XDW01e-161A0A0D9XDW0_9ORYZ; Uncharacterized protein
STRINGOB09G17420.11e-161(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33193678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-60ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]