PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zpz_sc00008.1.g00220.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 16547.9 Da PI: 10.7272 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00052 | 37 | 59 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg++F + L H +H Zpz_sc00008.1.g00220.1.am.mk 37 FQCRTCGRRFATFQALGGHRTSH 59 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 15.7 | 4.2e-05 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F++ L H+r+H Zpz_sc00008.1.g00220.1.am.mk 90 HRCTTCGAVFPTGQALGGHMRRH 112 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.5E-9 | 36 | 60 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.47E-8 | 37 | 112 | No hit | No description |
SMART | SM00355 | 0.19 | 37 | 59 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.845 | 37 | 64 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 39 | 59 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.5E-13 | 89 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.245 | 90 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MTNLLHFLSL SLSPASKVIV KRDRGTRRTR LQDDGAFQCR TCGRRFATFQ ALGGHRTSHN 60 RPRVRANGLD LLLGASRPAG KGAAGKDAVH RCTTCGAVFP TGQALGGHMR RHKAAFDAAA 120 VEIMTSSGLS EEDGERDDAE DLLILPKTLI HFI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Zpz_sc00008.1.g00220.1.am.mk |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004980041.1 | 1e-49 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A368SBJ9 | 3e-48 | A0A368SBJ9_SETIT; Uncharacterized protein | ||||
STRING | Si027432m | 5e-49 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6730 | 26 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G53600.1 | 5e-22 | C2H2 family protein |