PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00007.1.g00610.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family BBR-BPC
Protein Properties Length: 368aa    MW: 40438.8 Da    PI: 10.2666
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00007.1.g00610.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind33.71.1e-101115187
                     GAGA_bind   1 mdddgsre.rnkgyyepaaslkenlglqlmssia.erdaki............rernlalsekkaavaerd.......... 57 
                                   mdddg    rn+g+y+     k nlglqlms +a +rd+k             ++  l+ +++++++++ +          
  Zpz_sc00007.1.g00610.1.sm.mk   1 MDDDGGLGiRNWGFYDIV---KGNLGLQLMSPVApDRDTKSllpnstflqnhgHHDALNQHHPQHSHHPGEygggrasgdl 78 
                                   999999999******987...9*********9999*****9999999888844444444444455555555********** PP

                     GAGA_bind  58 ........maflqrdkalae.rnkalverdnkllalllv 87 
                                           m+f++++++l+  r+++++  ++k+++  + 
  Zpz_sc00007.1.g00610.1.sm.mk  79 ptepqsihMDFAHNEAWLHAsRHQHVH--EQKIIHARPF 115
                                   *******************93444444..5555555544 PP
2GAGA_bind255.92.3e-7815936494293
                     GAGA_bind  94 alpvgvqvlsgtksidslqq.lse......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkk 167
                                   ++p+g+++ s+ +++ +++q + +      pql+++ +   +e+   ++ ++e ++ +++++ +kkrqr+++pk++kakk+
  Zpz_sc00007.1.g00610.1.sm.mk 159 QHPTGYKMRSDERHTLQMRQtQAQaqpqtqPQLQPPEASPCKED-GASPALVEDHSMVRNEPPVKKRQRSQQPKSPKAKKP 238
                                   56777777665555444444233355444466766666644444.455666666778888888999*************** PP

                     GAGA_bind 168 kkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvst 248
                                   kk   +++ + ++++  +r++ +kks+++v+ng++lD s++P+PvCsCtGa++qCY+WG+GGWqSaCCtttiS+yPLP++t
  Zpz_sc00007.1.g00610.1.sm.mk 239 KK-AIVPRGDGAPNRPAPRARGPKKSVGMVINGMDLDLSGIPTPVCSCTGAPQQCYRWGAGGWQSACCTTTISTYPLPMNT 318
                                   **.77888888888877**************************************************************** PP

                     GAGA_bind 249 krrgaRiagrKmSqgafkklLekLaaeGydl.snpvDLkdhWAkHG 293
                                   krrg RiagrKm qgafkk+LekL++eGy+l +np+DLk++WAkHG
  Zpz_sc00007.1.g00610.1.sm.mk 319 KRRGVRIAGRKMTQGAFKKVLEKLTGEGYNLiNNPIDLKTFWAKHG 364
                                   ******************************8689***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.5E-1421364IPR010409GAGA-binding transcriptional activator
PfamPF062172.5E-1001364IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDDDGGLGIR NWGFYDIVKG NLGLQLMSPV APDRDTKSLL PNSTFLQNHG HHDALNQHHP  60
QHSHHPGEYG GGRASGDLPT EPQSIHMDFA HNEAWLHASR HQHVHEQKII HARPFGPEQK  120
IVHAHPFGPE QKVIHAHPFG PAGHVGHPGH GGHPGHVRQH PTGYKMRSDE RHTLQMRQTQ  180
AQAQPQTQPQ LQPPEASPCK EDGASPALVE DHSMVRNEPP VKKRQRSQQP KSPKAKKPKK  240
AIVPRGDGAP NRPAPRARGP KKSVGMVING MDLDLSGIPT PVCSCTGAPQ QCYRWGAGGW  300
QSACCTTTIS TYPLPMNTKR RGVRIAGRKM TQGAFKKVLE KLTGEGYNLI NNPIDLKTFW  360
AKHGLGMS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00007.1.g00610.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461880.11e-149protein Barley B recombinant
RefseqXP_021309578.11e-149protein Barley B recombinant
SwissprotQ8GUC31e-125BBR_HORVU; Protein Barley B recombinant
TrEMBLC5X4B51e-147C5X4B5_SORBI; Uncharacterized protein
STRINGSb02g009750.11e-148(Sorghum bicolor)
STRINGSb02g009782.11e-148(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01930.22e-53basic pentacysteine1