PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00003.1.g00180.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 299aa    MW: 33155.5 Da    PI: 11.2165
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00003.1.g00180.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.31.4e-16131180255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr +k +g+WvAeIr+p +   r+r++lg++ t+  Aa+a++ a  +l+g
  Zpz_sc00003.1.g00180.1.am.mk 131 QYRGVRMRK-WGKWVAEIREPHK---RTRIWLGSYATPVAAARAYDTAVFYLRG 180
                                   69*****99.**********732...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.4E-30130189IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-21131190IPR016177DNA-binding domain
SMARTSM003807.9E-36131194IPR001471AP2/ERF domain
PROSITE profilePS5103222.589131188IPR001471AP2/ERF domain
PfamPF008473.8E-10131180IPR001471AP2/ERF domain
PRINTSPR003678.8E-12132143IPR001471AP2/ERF domain
CDDcd000182.78E-24134189No hitNo description
PRINTSPR003678.8E-12170190IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MPPRTRKIPV QIPPSKWIAR ERREKARPTP KATASCCGSG LLPFRRPAYR YPSREGSRSR  60
SRRRRLGWLL MQGEYRSSSE ESAAAAAAAA AAAAAAMAPL AAAAAAAVKM EEQAAMAPSA  120
EQHQQQQPRR QYRGVRMRKW GKWVAEIREP HKRTRIWLGS YATPVAAARA YDTAVFYLRG  180
RSARLNFPDE IPALALSEGG DADGGTLSAA SIRKKAIEVG SRVDALQTGM MVAPPPHHCE  240
RPRHNHHHHH QHRELQLLGD EHHQHEQKPP PQQPRAAWSG RAKNPDLNRA PSPESSDAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-13130188463ATERF1
3gcc_A1e-13130188463ATERF1
5wx9_A1e-131311901474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00003.1.g00180.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701301e-104BT070130.1 Zea mays full-length cDNA clone ZM_BFc0110K17 mRNA, complete cds.
GenBankEU9669061e-104EU966906.1 Zea mays clone 298090 dehydration responsive element binding protein mRNA, complete cds.
GenBankKJ7278781e-104KJ727878.1 Zea mays clone pUT5971 AP2-EREBP transcription factor (EREB47) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826193.12e-80ethylene-responsive transcription factor RAP2-10-like
SwissprotO221745e-46ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A2S3IAZ33e-79A0A2S3IAZ3_9POAL; Uncharacterized protein
STRINGPavir.J27349.1.p5e-84(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.12e-41DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]