PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00003.1.g00150.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family AP2
Protein Properties Length: 446aa    MW: 47230 Da    PI: 6.7969
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00003.1.g00150.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.4e-17104153155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Zpz_sc00003.1.g00150.1.sm.mkhc 104 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 153
                                     78*******************......55************************997 PP
2AP246.49.7e-15196246155
                             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     s+y+GV+ +k  grW+A+   +     +k+++lg f+t+eeAa+a+++a+ k +g
  Zpz_sc00003.1.g00150.1.sm.mkhc 196 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 246
                                     89********.7******5553..2.26**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.0E-9104153IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16104162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-17105161IPR001471AP2/ERF domain
SMARTSM003805.9E-31105167IPR001471AP2/ERF domain
PROSITE profilePS5103217.701105161IPR001471AP2/ERF domain
PfamPF008479.9E-11196246IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-18196256IPR016177DNA-binding domain
CDDcd000189.17E-26196256No hitNo description
PROSITE profilePS5103216.489197254IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17197255IPR001471AP2/ERF domain
SMARTSM003803.9E-34197260IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0010093Biological Processspecification of floral organ identity
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MWDLNDTPAA EAVATVSPSA DDSGASSSSA AALVDVPEDA DDADAVVTRQ FFPTPAATAA  60
GAGSTDAVRS ASWLRLAAAP PPPAPAVAAA SSKKSRRGPR SRSSQYRGVT FYRRTGRWES  120
HIWDCGKQVY LGGFDTAHAA ARAYDRAAIK FRGVEADINF SLEDYKDDMK QMGNLSKEEF  180
VHVLRRQSTG CPRGSSKYRG VTLHKCGRWE ARMGQFLGKK YVYLGLFDTE EEAARAYDRA  240
AIKCNGKDAV TNFDASVYAE EMEATSAATG GDDEHNLDLS LGSSAGSKRG SLDGVGDEES  300
SDQRVPMAFD LDWQTAAARS TKAKFDENSQ QAQMPPASQA YHLSFNPRHH HQFLSSGDPG  360
TAGGLSLTIG GAGGGGGHWP PQPQRLPHGW GNGGGGGATT WPVMPPAYPP APGAATAAAA  420
SSRFPPYVTT QQAPGWNGFH SLTRPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00003.1.g00150.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0561880.0BT056188.1 Zea mays full-length cDNA clone ZM_BFb0070P06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824499.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X2
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0E0DJ660.0A0A0E0DJ66_9ORYZ; Uncharacterized protein
STRINGORGLA04G0237800.11e-178(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.27e-93AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]