PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc12461.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 157aa MW: 16550.6 Da PI: 6.3549 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 99.3 | 6.9e-31 | 63 | 130 | 6 | 73 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 rh ++hTkv+gR+RR+Rl caar+ L++eLG++ d++t+ WLlqq++pa++++tgt++ +a ++ Zmw_sc12461.1.g00010.1.am.mk 63 PRHRDRHTKVEGRGRRIRLAEACAARIARLTRELGHKNDGETVRWLLQQSEPAVIAATGTGTVPAIAT 130 69**********************************************************77777333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.4E-25 | 65 | 132 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 21.52 | 65 | 119 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MGEEDVAAIY HAAGNGTAVT DEAVVGIDAM GSSEAHGSLM PKPEPAPMEF LGELQVANPR 60 PAPRHRDRHT KVEGRGRRIR LAEACAARIA RLTRELGHKN DGETVRWLLQ QSEPAVIAAT 120 GTGTVPAIAT TVDGVLRLPS SPPAAVADGD QQPDPKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025803340.1 | 5e-64 | transcription factor PCF2-like | ||||
Swissprot | A2YXQ1 | 1e-46 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 1e-46 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A3L6QPY7 | 3e-65 | A0A3L6QPY7_PANMI; Transcription factor PCF2-like | ||||
STRING | Si030591m | 2e-61 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Publications ? help Back to Top | |||
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