PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc10841.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 459aa MW: 47348.4 Da PI: 7.3584 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 215.7 | 2.5e-66 | 193 | 459 | 2 | 274 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaa 80 ++lL ++A av++g+++ a a La l+ a+p+gd+ qRl+a++t AL++r+ p+s+ + e+ aa Zmw_sc10841.1.g00010.1.am.mk 193 RQLLSDAAAAVADGNQTVAAAHLAVLKISANPRGDAEQRLVAMMTGALSSRVGP---------PSSQHLV-DlcGGEQRAA 263 6899*************************************************9.........2222222.2236667789 PP GRAS 81 lklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skee 157 +l+++vsP++ ++ aN aIl+av+ ++++H++Dfd+s +Q +aL+qaL +R++ sl+iT+v++p+s +++ Zmw_sc10841.1.g00010.1.am.mk 264 CQLLHDVSPCFGLALHGANLAILDAVADHRAIHVVDFDVSI-AQHIALIQALGNRRAAGTSLKITAVADPTSPftpaLAQA 343 9**************************************97.79*************************9988899999** PP GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 l +t erL++ A++ gv+f+f++ v+ + +++e ++L ++pgEalaVnl++ l r++desvs +++rde+L+ v+ l P+v Zmw_sc10841.1.g00010.1.am.mk 344 LASTTERLKRHAQQAGVEFRFKA-VSCSAAEIEASRLGCQPGEALAVNLAFFLSRVPDESVSPANPRDELLRRVRALGPRV 423 ***********************.6889999************************************************** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleak 274 v++veqe+++n++++++rf++a+ +y a+++sl+a+ Zmw_sc10841.1.g00010.1.am.mk 424 VTLVEQELNTNTAPLAARFADACAHYGAVLESLDAT 459 *********************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 37.418 | 166 | 459 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.6E-64 | 193 | 459 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
CLRAVKQRTA APVPPGHHQL DIGAVLAGAA SARARGLSGQ PSAGFAGPSP QPSSTLSSLT 60 TASPMQQLWQ RQVMAAPSAP VAKGAAATAR PTTAREMVLL RELEKQLLGD DEEVEAEAAG 120 SVCGSAVTNS GWGETIHELN SIAATPLPSH PKTMTATNRY NTVPMSRSPS NSTSSATSST 180 ASSSPPTSAA SSRQLLSDAA AAVADGNQTV AAAHLAVLKI SANPRGDAEQ RLVAMMTGAL 240 SSRVGPPSSQ HLVDLCGGEQ RAACQLLHDV SPCFGLALHG ANLAILDAVA DHRAIHVVDF 300 DVSIAQHIAL IQALGNRRAA GTSLKITAVA DPTSPFTPAL AQALASTTER LKRHAQQAGV 360 EFRFKAVSCS AAEIEASRLG CQPGEALAVN LAFFLSRVPD ESVSPANPRD ELLRRVRALG 420 PRVVTLVEQE LNTNTAPLAA RFADACAHYG AVLESLDAT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-28 | 188 | 457 | 1 | 270 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025812574.1 | 0.0 | scarecrow-like protein 8 | ||||
TrEMBL | A0A0A9FCJ7 | 0.0 | A0A0A9FCJ7_ARUDO; Uncharacterized protein | ||||
STRING | Si016627m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4188 | 34 | 74 |