PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc10520.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 112aa MW: 12395 Da PI: 10.2045 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 63.4 | 6.8e-20 | 9 | 79 | 56 | 128 |
NAM 56 kewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapk.gektdWvmheyrl 128 ewyfF++++++ ++ +nrat sgyW+ + +++++e +g+kktLvfy+g +pk + kt+W+m eyrl Zmw_sc10520.1.g00010.1.am.mk 9 AEWYFFCPTEST---STSSNRATGSGYWQVISANAIRKHATSEIIGIKKTLVFYRGPTPKsSIKTHWIMSEYRL 79 59******9875...5789**********998876666669999************6655156*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 22.117 | 1 | 105 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.55E-20 | 10 | 84 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-14 | 11 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 112 aa Download sequence Send to blast |
MAMSSLALAE WYFFCPTEST STSSNRATGS GYWQVISANA IRKHATSEII GIKKTLVFYR 60 GPTPKSSIKT HWIMSEYRLA DDTFRSISNS VKGSSSHAST QVRASLQSTM YV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-14 | 10 | 91 | 72 | 154 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-14 | 10 | 91 | 72 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-14 | 10 | 91 | 72 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-14 | 10 | 91 | 72 | 154 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-14 | 10 | 91 | 75 | 157 | NAC domain-containing protein 19 |
3swm_B | 3e-14 | 10 | 91 | 75 | 157 | NAC domain-containing protein 19 |
3swm_C | 3e-14 | 10 | 91 | 75 | 157 | NAC domain-containing protein 19 |
3swm_D | 3e-14 | 10 | 91 | 75 | 157 | NAC domain-containing protein 19 |
3swp_A | 3e-14 | 10 | 91 | 75 | 157 | NAC domain-containing protein 19 |
3swp_B | 3e-14 | 10 | 91 | 75 | 157 | NAC domain-containing protein 19 |
3swp_C | 3e-14 | 10 | 91 | 75 | 157 | NAC domain-containing protein 19 |
3swp_D | 3e-14 | 10 | 91 | 75 | 157 | NAC domain-containing protein 19 |
4dul_A | 3e-14 | 10 | 91 | 72 | 154 | NAC domain-containing protein 19 |
4dul_B | 3e-14 | 10 | 91 | 72 | 154 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3S3NV45 | 1e-16 | A0A3S3NV45_9MAGN; NAC domain-containing protein 68-like protein | ||||
STRING | VIT_15s0048g02270.t01 | 2e-16 | (Vitis vinifera) | ||||
STRING | EMT02241 | 7e-17 | (Aegilops tauschii) | ||||
STRING | Traes_4DL_F0BE36C9D.1 | 2e-16 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP35690 | 3 | 4 |