PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc10323.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | HB-other | ||||||||
Protein Properties | Length: 80aa MW: 8916.2 Da PI: 9.2363 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54 | 2.8e-17 | 28 | 80 | 3 | 51 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNr 51 k ++t+eq+e+Le+l+ +++ps ++r++L +++ +++ +q+kvWFqNr Zmw_sc10323.1.g00010.1.sm.mk 28 KYVRYTPEQVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNR 80 5679************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-15 | 10 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.491 | 23 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.1E-4 | 25 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.24E-13 | 27 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.40E-12 | 28 | 80 | No hit | No description |
Pfam | PF00046 | 7.5E-15 | 28 | 80 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
MAAAVAMRGG SSDSGGGFDK GPGMDSGKYV RYTPEQVEVL ERLYIDCPKP SSSRRQQLLR 60 ECPILANIEP KQIKVWFQNR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025795001.1 | 1e-45 | homeobox-leucine zipper protein HOX10 | ||||
Refseq | XP_025795002.1 | 1e-45 | homeobox-leucine zipper protein HOX10 | ||||
Refseq | XP_025795003.1 | 1e-45 | homeobox-leucine zipper protein HOX10 | ||||
Refseq | XP_025795004.1 | 1e-45 | homeobox-leucine zipper protein HOX10 | ||||
Swissprot | Q6TAQ6 | 1e-42 | HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10 | ||||
TrEMBL | A0A1D6JKR7 | 5e-46 | A0A1D6JKR7_MAIZE; Rolled leaf2 | ||||
TrEMBL | B4FK18 | 3e-47 | B4FK18_MAIZE; Uncharacterized protein | ||||
STRING | Pavir.Ia04841.1.p | 9e-46 | (Panicum virgatum) | ||||
STRING | Sb01g050000.1 | 1e-44 | (Sorghum bicolor) | ||||
STRING | GRMZM2G042250_P03 | 2e-44 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18491 | 5 | 8 |
Publications ? help Back to Top | |||
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