PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc10007.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 263aa    MW: 30190.6 Da    PI: 8.3578
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc10007.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.43.6e-161511157
                                    HHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                        Homeobox 11 qleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                    q+e+Le+l+  +++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  Zmw_sc10007.1.g00010.1.am.mkhc  1 QVEVLERLYIDCPKPSSSRRQQLLRECpilaNIEPKQIKVWFQNRRCRDKQ 51
                                    89**********************************************996 PP
2START42.61.7e-1414622449125
                                     EEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EE CS
                           START  49 rasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwv 124
                                     +a+  v m+ +++ e+l d++  W +++++ e+      g  g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v
  Zmw_sc10007.1.g00010.1.am.mkhc 146 TAIDWVQMPGMKVIEILKDRP-SWFRDCRSLEVFTMFPAGngGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLV 223
                                     567789999996666666666.***********999999999*********************************9998 PP

                                     E CS
                           START 125 i 125
                                      
  Zmw_sc10007.1.g00010.1.am.mkhc 224 A 224
                                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-15151IPR009057Homeodomain-like
SMARTSM003893.0E-5156IPR001356Homeobox domain
PfamPF000469.7E-14151IPR001356Homeobox domain
SuperFamilySSF466894.28E-13154IPR009057Homeodomain-like
CDDcd000869.23E-12153No hitNo description
PROSITE profilePS5007115.013152IPR001356Homeobox domain
CDDcd146862.84E-54584No hitNo description
SuperFamilySSF559611.17E-13126227No hitNo description
PfamPF018524.0E-11146224IPR002913START domain
Gene3DG3DSA:3.30.530.201.3E-6156227IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
QVEVLERLYI DCPKPSSSRR QQLLRECPIL ANIEPKQIKV WFQNRRCRDK QRKESSRLQA  60
VNRKLTAMNK LLMEENERLQ KQVSQLVHEN AHMRQQLQNT SLTNDTSCES NVTTPPNPIR  120
DASNPSGLLS IAEETYTEFL SKATGTAIDW VQMPGMKVIE ILKDRPSWFR DCRSLEVFTM  180
FPAGNGGTIE LVYMQMYAPT TLVPARDFWT LRYTTTMEDG SLVAWSVPEV LRPLYESSSV  240
VAQKMTTVVR ACEMSLQSFS FNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR166 in the shoot apicam meristem (SAM) region of devoloping embryo. {ECO:0000269|PubMed:17804793}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986037.11e-160homeobox-leucine zipper protein HOX10
SwissprotA2XBL91e-152HOX10_ORYSI; Homeobox-leucine zipper protein HOX10
SwissprotQ6TAQ61e-153HOX10_ORYSJ; Homeobox-leucine zipper protein HOX10
TrEMBLA0A1D6JKR71e-164A0A1D6JKR7_MAIZE; Rolled leaf2
STRINGSi034251m1e-160(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]