PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc09950.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 468aa    MW: 50688.9 Da    PI: 5.2715
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc09950.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.45.4e-93754652373
                          GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaa 80 
                                   ++lL++cA+a++++d++l+q++L+ l+++a pdgd++qRl+a f+ AL +r +r   ++ + +a+++  +s   ++++++a
  Zmw_sc09950.1.g00010.1.am.mk  75 EQLLVHCANAIEANDATLTQQILWVLNNIAPPDGDSNQRLTAAFLCALVTRASRtgACKAVTAAVAAAVESAALHVHRFTA 155
                                   79***************************************************9333444444444444444446666677 PP

                          GRAS  81 lkl..fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....sk 155
                                    +l  f +++P+++f++ +aN  Ileaveg   vHi+D++ ++++Q p+L++ LasR+egpp lR+T+ +  ++       
  Zmw_sc09950.1.g00010.1.am.mk 156 IELasFIDLTPWHRFGYTAANASILEAVEGFPVVHIVDLSTTHCMQIPTLIDMLASRAEGPPILRLTVADVGSYApppaLD 236
                                   66689***************************************************************9987777777777 PP

                          GRAS 156 eeleetgerLakfAeelgvpfefnvl.......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles......e 223
                                    ++ e+g +L +fA++ +++++f+v+       +++ +++l++++L  +  Eal+Vn+++ l +++de++ + s       
  Zmw_sc09950.1.g00010.1.am.mk 237 MSYDELGAKLVNFARSRNMSMDFRVVptspadaLTSLVDQLRVQQLVSDGTEALVVNCHMLLRTVPDETAGSVSlaqpvsL 317
                                   8899**********************887666555566677777777777****************998776666657767 PP

                          GRAS 224 rdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304
                                   r+ +Lk +++l P +vvvve++ad ++++ + r+  a+++++  +d++++ lp+ se+r+++E+e +g++++nv+a+eg e
  Zmw_sc09950.1.g00010.1.am.mk 318 RTMLLKSIRTLDPALVVVVEEDADFTAGDVVGRLRAAFNFMWIPYDAVDTFLPKGSEQRRWYEAE-VGWKVENVLAQEGVE 397
                                   999**************************************************************.*************** PP

                          GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   r+er+e  ++W +r+++aGF+pv+++e+aa ++k++l++++  g+ ++ e++ +vl+Wk++++v++SaW
  Zmw_sc09950.1.g00010.1.am.mk 398 RVERQEDRARWGQRMRNAGFRPVAFNEEAAGEVKAMLNEHA-AGWGMKREDDDIVLTWKGHNVVFASAW 465
                                   *****************************************.8899999******************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.98348447IPR005202Transcription factor GRAS
PfamPF035141.9E-9075465IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
LAGLYPSPSP PASAPYMMQF THTAPPPPPL NPNNGHGLGL GLFLDVGGAP RARPWPGTPS  60
SKISLGNLNS TSCMEQLLVH CANAIEANDA TLTQQILWVL NNIAPPDGDS NQRLTAAFLC  120
ALVTRASRTG ACKAVTAAVA AAVESAALHV HRFTAIELAS FIDLTPWHRF GYTAANASIL  180
EAVEGFPVVH IVDLSTTHCM QIPTLIDMLA SRAEGPPILR LTVADVGSYA PPPALDMSYD  240
ELGAKLVNFA RSRNMSMDFR VVPTSPADAL TSLVDQLRVQ QLVSDGTEAL VVNCHMLLRT  300
VPDETAGSVS LAQPVSLRTM LLKSIRTLDP ALVVVVEEDA DFTAGDVVGR LRAAFNFMWI  360
PYDAVDTFLP KGSEQRRWYE AEVGWKVENV LAQEGVERVE RQEDRARWGQ RMRNAGFRPV  420
AFNEEAAGEV KAMLNEHAAG WGMKREDDDI VLTWKGHNVV FASAWAPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_B3e-537546734420Protein SHORT-ROOT
5b3h_E3e-537546734420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165039.10.0scarecrow-like protein 32
SwissprotQ9SN221e-163SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A3B6C3300.0A0A3B6C330_WHEAT; Uncharacterized protein
TrEMBLA0A3L6TA250.0A0A3L6TA25_PANMI; Transcription factor containing protein, GRAS family
TrEMBLA0A446M2X20.0A0A446M2X2_TRITD; Uncharacterized protein
STRINGTraes_2BS_FDABA21A7.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56973759