PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc09643.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 248aa    MW: 27018 Da    PI: 4.2032
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc09643.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.7e-132365246
                                  SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                                  g +T eEd l++ +  + G++ W+ Ia++++ gRt++++k++w++
  Zmw_sc09643.1.g00010.1.sm.mk 23 GGFTDEEDNLILSLYGEIGSK-WSVIASRLP-GRTDNDVKNYWNT 65
                                  569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.344116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-10228IPR009057Homeodomain-like
SuperFamilySSF466899.41E-22370IPR009057Homeodomain-like
PROSITE profilePS5129419.4971771IPR017930Myb domain
SMARTSM007172.6E-122169IPR001005SANT/Myb domain
PfamPF002491.5E-122365IPR001005SANT/Myb domain
CDDcd001671.10E-102567No hitNo description
Gene3DG3DSA:1.10.10.604.0E-192968IPR009057Homeodomain-like
SuperFamilySSF1014475.49E-58292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
LKRCGKSCRL RWLNYLRPEL RHGGFTDEED NLILSLYGEI GSKWSVIASR LPGRTDNDVK  60
NYWNTKLKKR FFAAADRKGT LPPPPPPPPP PPTSSGDDGT AAVATESEPE YDRAPPDPSP  120
TTPSLANLDA AVVDNDDELL VKSEQLYSEL MGLIEQQSAE TSAMESLFTA TSSTGTTPAV  180
SSRSGSCNVW PAKDVQDSGL LSESISGLFD GYDVFGAADL MPAYSFQELL AASSYDEFTT  240
VNQELMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1937140108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456264.11e-75transcription factor MYB58
TrEMBLA0A3L6SJ651e-74A0A3L6SJ65_PANMI; Myb-related protein Zm38-like
STRINGSb03g033160.14e-75(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13538412