PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc09537.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | CAMTA | ||||||||
Protein Properties | Length: 68aa MW: 8253.4 Da PI: 10.1332 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 116.7 | 1.2e-36 | 1 | 68 | 37 | 104 |
CG-1 37 gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLee 104 g+++Ly+rk+vr+frkDG++wkkkkdgktv+E+hekLK+g+ e +++yYa++e++p+f rrcywlL++ Zmw_sc09537.1.g00010.1.am.mkhc 1 GTVVLYDRKVVRNFRKDGHNWKKKKDGKTVQEAHEKLKIGNEEKVHVYYARGEDDPNFFRRCYWLLDK 68 789***************************************************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01076 | 4.8E-16 | 1 | 68 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.9E-29 | 1 | 68 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 50.912 | 1 | 68 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 68 aa Download sequence Send to blast |
GTVVLYDRKV VRNFRKDGHN WKKKKDGKTV QEAHEKLKIG NEEKVHVYYA RGEDDPNFFR 60 RCYWLLDK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro. Binds to the DNA consensus sequence 5'-T[AC]CG[CT]GT[GT][GT][GT][GT]T[GT]CG-3'. {ECO:0000269|PubMed:16192280}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352474.1 | 9e-43 | uncharacterized protein LOC100502366 | ||||
Swissprot | Q7XHR2 | 2e-43 | CBT_ORYSJ; Calmodulin-binding transcription activator CBT | ||||
TrEMBL | A0A1D6IBR1 | 3e-42 | A0A1D6IBR1_MAIZE; Calmodulin-binding transcription activator 5 | ||||
STRING | Pavir.J11066.1.p | 1e-42 | (Panicum virgatum) | ||||
STRING | Sb02g033620.1 | 4e-42 | (Sorghum bicolor) | ||||
STRING | GRMZM2G032336_P01 | 3e-42 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19838 | 3 | 4 |