PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc09157.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | FAR1 | ||||||||
Protein Properties | Length: 512aa MW: 56474.4 Da PI: 8.2235 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 39 | 2.6e-12 | 15 | 72 | 32 | 88 |
FAR1 32 tfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 t+ s eg+ e+ + +++++++ra tr+gCka++++kk +kw +tk++++HnH Zmw_sc09157.1.g00010.1.sm.mkhc 15 TYATSTEGFYERPGDGlHSDQKQERADTRVGCKAMIMIKKFGPDKWIITKFVKKHNHG 72 66677778777666655788999**********************************5 PP | |||||||
2 | FAR1 | 91.3 | 1.3e-28 | 120 | 211 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwe 77 fY +YA+ GF+ r+s+ +s+r+++i++r+ vCskeg+re ++kk ++k++r+r+ tr+gCka+++vkk+++gkw+ Zmw_sc09157.1.g00010.1.sm.mkhc 120 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRSKKvidESKTKRPRMITRVGCKAMIVVKKMNSGKWM 198 9********************************************999999999************************* PP FAR1 78 vtkleleHnHela 90 v+k+e+eHnH+l+ Zmw_sc09157.1.g00010.1.sm.mkhc 199 VSKFEKEHNHALS 211 **********996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-10 | 14 | 72 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.5E-26 | 120 | 211 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MEFESEDAAR DFYSTYATST EGFYERPGDG LHSDQKQERA DTRVGCKAMI MIKKFGPDKW 60 IITKFVKKHN HGPIPPRKLD AMPAHLDGDP IVKPHSMEAD LAKEPFEGME FESEEAAKLF 120 YVNYARLNGF RARISRYCRS RRDNSIISRQ IVCSKEGFRE VRSKKVIDES KTKRPRMITR 180 VGCKAMIVVK KMNSGKWMVS KFEKEHNHAL SCSKMVPSAP DITAGEVDHV TAGIPDPCQE 240 AIKFAKEGSV TEEVYHVAVS ALKEAADKVA AIKRNHPALP GRGCITERNQ EVLQMKPVIA 300 FQSVNDVGLK KPAPGPKIFQ EPSSNVVLMP TSFLTDPRQQ HGLLINGGQC RREPEDSYLH 360 TENIKEGSSQ KPQKTSSDQA IHEKNKGILG SSEEAMVAIP AIPLALCMPV TQSLHGASAA 420 LACGARLVPL EEAASLVKAI ESKIRSGEAI ISKLPSSNLT SHAPVTMSSS SEDDESDHSE 480 PLMVDAGHRC KDHNSDKLQK YMDNAANSQA RT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698434.1 | 0.0 | uncharacterized protein LOC101766516 | ||||
TrEMBL | K4A6I7 | 0.0 | K4A6I7_SETIT; Uncharacterized protein | ||||
STRING | Si034492m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9031 | 33 | 45 |