PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc09157.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family FAR1
Protein Properties Length: 512aa    MW: 56474.4 Da    PI: 8.2235
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc09157.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1392.6e-1215723288
                            FAR1 32 tfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
                                    t+  s eg+ e+  +  +++++++ra tr+gCka++++kk   +kw +tk++++HnH 
  Zmw_sc09157.1.g00010.1.sm.mkhc 15 TYATSTEGFYERPGDGlHSDQKQERADTRVGCKAMIMIKKFGPDKWIITKFVKKHNHG 72
                                    66677778777666655788999**********************************5 PP

2FAR191.31.3e-28120211290
                            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwe 77 
                                     fY +YA+  GF+ r+s+  +s+r+++i++r+ vCskeg+re ++kk   ++k++r+r+ tr+gCka+++vkk+++gkw+
  Zmw_sc09157.1.g00010.1.sm.mkhc 120 FYVNYARLNGFRARISRYCRSRRDNSIISRQIVCSKEGFREVRSKKvidESKTKRPRMITRVGCKAMIVVKKMNSGKWM 198
                                     9********************************************999999999************************* PP

                            FAR1  78 vtkleleHnHela 90 
                                     v+k+e+eHnH+l+
  Zmw_sc09157.1.g00010.1.sm.mkhc 199 VSKFEKEHNHALS 211
                                     **********996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-101472IPR004330FAR1 DNA binding domain
PfamPF031011.5E-26120211IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MEFESEDAAR DFYSTYATST EGFYERPGDG LHSDQKQERA DTRVGCKAMI MIKKFGPDKW  60
IITKFVKKHN HGPIPPRKLD AMPAHLDGDP IVKPHSMEAD LAKEPFEGME FESEEAAKLF  120
YVNYARLNGF RARISRYCRS RRDNSIISRQ IVCSKEGFRE VRSKKVIDES KTKRPRMITR  180
VGCKAMIVVK KMNSGKWMVS KFEKEHNHAL SCSKMVPSAP DITAGEVDHV TAGIPDPCQE  240
AIKFAKEGSV TEEVYHVAVS ALKEAADKVA AIKRNHPALP GRGCITERNQ EVLQMKPVIA  300
FQSVNDVGLK KPAPGPKIFQ EPSSNVVLMP TSFLTDPRQQ HGLLINGGQC RREPEDSYLH  360
TENIKEGSSQ KPQKTSSDQA IHEKNKGILG SSEEAMVAIP AIPLALCMPV TQSLHGASAA  420
LACGARLVPL EEAASLVKAI ESKIRSGEAI ISKLPSSNLT SHAPVTMSSS SEDDESDHSE  480
PLMVDAGHRC KDHNSDKLQK YMDNAANSQA RT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012698434.10.0uncharacterized protein LOC101766516
TrEMBLK4A6I70.0K4A6I7_SETIT; Uncharacterized protein
STRINGSi034492m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90313345