PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc09150.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 170aa MW: 18877.1 Da PI: 6.6267 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 110.4 | 8.4e-35 | 70 | 128 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe Zmw_sc09150.1.g00020.1.am.mkhc 70 LDDGYRWRKYGQKVVKGNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 128 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.9E-39 | 55 | 130 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-31 | 62 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.297 | 65 | 130 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.5E-40 | 70 | 129 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-27 | 71 | 128 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MIEPVPGPAS DDDIDVGGGR PYPVDDANED DDLDSKRRKM ESAGIDAALM GKPNREPRVV 60 VQTVSEVDIL DDGYRWRKYG QKVVKGNPNP RSYYKCTHTG CPVRKHVERA SHDPKSVITT 120 YEGKHNHEVP ASKTASHEMS TAPMKTAVHT INSNMPGLGV AWDFQECQYK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-39 | 61 | 131 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-39 | 61 | 131 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015695163.1 | 1e-99 | PREDICTED: WRKY transcription factor SUSIBA2-like | ||||
Swissprot | Q6VWJ6 | 9e-96 | WRK46_HORVU; WRKY transcription factor SUSIBA2 | ||||
TrEMBL | A0A0B5GUL9 | 8e-98 | A0A0B5GUL9_9POAL; WRKY17 transcription factor (Fragment) | ||||
TrEMBL | J3MMF6 | 2e-98 | J3MMF6_ORYBR; Uncharacterized protein | ||||
STRING | OB07G25880.1 | 4e-99 | (Oryza brachyantha) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6740 | 38 | 51 |