PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc09150.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 445aa    MW: 49167.2 Da    PI: 5.9716
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc09150.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.23e-134754441373
                          GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 
                                   l++lL++cA+av++++  +++ l+ +l++++s +g+p++Rl ay++e+L arla s++++ykal+++e +    se l+++
  Zmw_sc09150.1.g00010.1.am.mk  75 LKDLLITCARAVEENNSFAINLLIPELRKMVSVSGEPLERLGAYMVEGLVARLAASGNSIYKALKCKEPK---GSELLSYM 152
                                   5789*****************************************************************9...9******* PP

                          GRAS  82 klfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeelee 160
                                   ++++e++P++kf+++ aN aI eav+ge+r+HiiDf isqG+QW++LlqaLa+Rp+gpp +RiTg++++ s   +   le 
  Zmw_sc09150.1.g00010.1.am.mk 153 HFLYEACPYFKFGYMSANGAIAEAVKGEDRIHIIDFHISQGAQWISLLQALAARPGGPPFVRITGIDDSFSAfaRGGGLEL 233
                                   ********************************************************************77769999***** PP

                          GRAS 161 tgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                   +g+rL+++A  ++vpfef+  v  + +d+e+e+L + pgEa+aVn+ l+lh+++de vs++++rd++L+l+kslsPkv+++
  Zmw_sc09150.1.g00010.1.am.mk 234 VGKRLSHVAGLCKVPFEFHG-VGVSGHDIEVEHLGIVPGEAIAVNFTLELHHIPDEAVSTANHRDRILRLIKSLSPKVLTL 313
                                   ********************.7999******************************************************** PP

                          GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleea 322
                                   veqe+++n+++F++rf+e+l+yy+a+f+s++  lpr+++eri++E+++l+reivn+vaceg+er+erhe ++kW++rl++a
  Zmw_sc09150.1.g00010.1.am.mk 314 VEQESNTNTAPFVHRFAETLDYYTAIFESIDLALPRDDKERINMEQHCLAREIVNLVACEGEERVERHEVFGKWKSRLMMA 394
                                   ********************************************************************************* PP

                          GRAS 323 GFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                   GF+p pls  +++++k+ll++++ + y++ e++g l+lgWk+rpLv+ SaW
  Zmw_sc09150.1.g00010.1.am.mk 395 GFRPSPLSALVNATIKTLLQTYSPN-YKLLEREGVLYLGWKNRPLVVSSAW 444
                                   ***********************55.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.51649426IPR005202Transcription factor GRAS
PfamPF035141.0E-13175444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
EDSHSGSTNG NGSPVSTSCV TEDPDDLKQK LKDLEAAMLG TDSEIVDSLE ISVKNQLSLE  60
SEGWVHMMSM PRGNLKDLLI TCARAVEENN SFAINLLIPE LRKMVSVSGE PLERLGAYMV  120
EGLVARLAAS GNSIYKALKC KEPKGSELLS YMHFLYEACP YFKFGYMSAN GAIAEAVKGE  180
DRIHIIDFHI SQGAQWISLL QALAARPGGP PFVRITGIDD SFSAFARGGG LELVGKRLSH  240
VAGLCKVPFE FHGVGVSGHD IEVEHLGIVP GEAIAVNFTL ELHHIPDEAV STANHRDRIL  300
RLIKSLSPKV LTLVEQESNT NTAPFVHRFA ETLDYYTAIF ESIDLALPRD DKERINMEQH  360
CLAREIVNLV ACEGEERVER HEVFGKWKSR LMMAGFRPSP LSALVNATIK TLLQTYSPNY  420
KLLEREGVLY LGWKNRPLVV SSAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-69794458375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958142.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLK3ZS380.0K3ZS38_SETIT; Uncharacterized protein
STRINGSi029418m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]