PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc08768.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 222aa MW: 23959 Da PI: 4.4832 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.4 | 3.8e-09 | 19 | 65 | 4 | 45 |
S-HHHHHHHHHHHHHTTTT......-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg......tWktIartmgkgRtlkqcksrwq 45 WT e ++ + +av+ + +W++Ia+ + g+t+++++ ++ Zmw_sc08768.1.g00010.1.sm.mkhc 19 WTREQEKAFENAVATVAEDdtdgdaRWEKIAELVE-GKTAEEVRRHYE 65 *****************99****************.**********96 PP | |||||||
2 | Myb_DNA-binding | 41.1 | 4.2e-13 | 128 | 172 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + Rt+ q+ s+ qky Zmw_sc08768.1.g00010.1.sm.mkhc 128 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 172 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.465 | 14 | 72 | IPR017884 | SANT domain |
SMART | SM00717 | 4.1E-6 | 15 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.08E-10 | 18 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.09E-7 | 19 | 68 | No hit | No description |
Pfam | PF00249 | 3.6E-7 | 19 | 65 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-4 | 19 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.671 | 121 | 177 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.2E-16 | 123 | 178 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-11 | 125 | 175 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.1E-17 | 125 | 175 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 3.5E-11 | 126 | 171 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-11 | 128 | 172 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.38E-9 | 128 | 173 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAVEEATSSG EEGGGGAGWT REQEKAFENA VATVAEDDTD GDARWEKIAE LVEGKTAEEV 60 RRHYELLVED VDGIEAGRVP LPTYAGDDEG GGGSGGGWSG KKGSGGGGGG GEKGSAKSAE 120 QERRKGVAWT EDEHRLFLLG LEKYGKGDWR SISRNFVISR TPTQVASHAQ KYFIRLNSMN 180 RERRRQSIHD ITSVNNGDAS AAQGPITDWE EDDDCTSMVL MY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 1e-17 | 14 | 84 | 6 | 73 | RADIALIS |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448771.1 | 1e-103 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 9e-81 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | C5YAI2 | 1e-102 | C5YAI2_SORBI; Uncharacterized protein | ||||
STRING | Sb06g032880.1 | 1e-103 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6376 | 38 | 54 |
Publications ? help Back to Top | |||
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