PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08683.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Protein Properties

Length: 340aa MW: 37722.5 Da PI: 9.4805

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08683.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.7	3.5e-12	98	176	17	98
E--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ++p +fa++ gg+ + + l ++ g++W+ l++ +++g+ l +GW eFv a+g+ +g +vvF+l+ + +v+ Zmw_sc08683.1.g00010.1.am.mk 98 RVPAEFAARLGGD--G-GLVLLVSPFGKVWRTALRHegGGNRGAWQLVEGWPEFVAAHGVAAGWSVVFRLECAGVA--TVR 173 6899*999988..3.3799*********995544444588999******************9764444..676 PP EE- CS B3 96 vfr 98 +f+ Zmw_sc08683.1.g00010.1.am.mk 174 AFD 176 665 PP
2	B3	38.6	1.9e-12	208	284	10	90
HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 + +p kf++eh + ++++s+ ++ ++ g+ W+v l ++ + +++ ++GW++F + ++L e+ ++vF+++g++ Zmw_sc08683.1.g00010.1.am.mk 208 LE---KMKMPDKFVQEHltE-SSPSSQNAIIFSRLGKFWRVDL--ERAQMGVLRGEGWSRFLRVHDLSERNILVFRYEGNM 282 33...3679*******54.55678899999*******..9999**************************9987 PP EE CS B3 89 ef 90 f Zmw_sc08683.1.g00010.1.am.mk 283 VF 284 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01019	2.9E-7	81	178	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	2.7E-12	82	176	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.06E-12	84	176	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	9.6E-10	98	176	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.939	114	178	IPR003340	B3 DNA binding domain
CDD	cd10017	1.49E-6	121	176	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.9E-15	195	290	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.32E-14	195	293	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.574	196	292	IPR003340	B3 DNA binding domain
CDD	cd10017	3.37E-10	197	284	No hit	No description
SMART	SM01019	7.5E-7	199	287	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.4E-10	209	283	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence Send to blast
VQQQSHAQFV PVVGWVGRRR SQLILALQSK GQCAAAGVKL SSPELQASLL GSHSCPCYLS 60 ARQPRSQSMA LSMHRARLKY AAALLSPSCR HKLPSVQRVP AEFAARLGGD GGLVLLVSPF 120 GKVWRTALRH EGGGNRGAWQ LVEGWPEFVA AHGVAAGWSV VFRLECAGVA TVRAFDGADC 180 LARFCTPLEG TMVKDRPRFF RLLRPEDLEK MKMPDKFVQE HLTESSPSSQ NAIIFSRLGK 240 FWRVDLERAQ MGVLRGEGWS RFLRVHDLSE RNILVFRYEG NMVFSAEAFL QDGRLKEYEA 300 AAGTHITDDI IGPSKPQGSQ PVLDSIFKLI YCYFYADVIC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021305580.1	7e-96	putative B3 domain-containing protein Os06g0632500
Swissprot	Q67VL7	2e-80	Y6325_ORYSJ; Putative B3 domain-containing protein Os06g0632500
TrEMBL	A0A194YKE1	9e-94	A0A194YKE1_SORBI; Uncharacterized protein
TrEMBL	A0A2T7DWC3	7e-94	A0A2T7DWC3_9POAL; Uncharacterized protein
STRING	OGLUM06G22930.1	4e-82	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP425	35	187