PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc08574.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | E2F/DP | ||||||||
Protein Properties | Length: 104aa MW: 11770.2 Da PI: 6.2554 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 48.4 | 1.6e-15 | 4 | 48 | 23 | 62 |
E2F_TDP 23 givtlnevakeLvse.....dvknkrRRiYDilNVLealnliekk 62 ++++l+e+a+ L+ e ++++k+RR+YDi+NVL++lnliek Zmw_sc08574.1.g00030.1.sm.mkhc 4 ETISLDEAARLLLGEghaesNMRTKVRRLYDIANVLSSLNLIEKL 48 79******************************************3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 9.7E-5 | 1 | 59 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.02E-7 | 3 | 48 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 2.0E-10 | 4 | 48 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF02319 | 4.2E-12 | 4 | 48 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MEVETISLDE AARLLLGEGH AESNMRTKVR RLYDIANVLS SLNLIEKLGQ GSRSDFVYGP 60 FHPSGAKKQE IGDHSVREER KSIQDWENLA VTFRPQYQNQ VVGL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004966858.1 | 7e-25 | E2F transcription factor-like E2FE | ||||
TrEMBL | A0A1E5WGM5 | 4e-37 | A0A1E5WGM5_9POAL; E2F transcription factor-like E2FF | ||||
STRING | Pavir.Ab02967.1.p | 4e-30 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3185 | 38 | 84 |