PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08480.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 424aa    MW: 45864.2 Da    PI: 8.0443
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08480.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-17145189147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   r +WT+eE++++++avk++G   W+ I +++g ++t+ q++s+ qk+
  Zmw_sc08480.1.g00010.1.am.mk 145 REKWTEEEHDKFLEAVKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 189
                                   789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-11139191IPR009057Homeodomain-like
SuperFamilySSF466891.12E-15140193IPR009057Homeodomain-like
PROSITE profilePS5129422.722140194IPR017930Myb domain
TIGRFAMsTIGR015572.7E-16143192IPR006447Myb domain, plants
SMARTSM007178.8E-15144192IPR001005SANT/Myb domain
PfamPF002492.3E-15145188IPR001005SANT/Myb domain
CDDcd001679.89E-12147190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MGCTSDVARF PPHPFALPPE ICRSRHAFIF FLSPFAAAVA RLLLPPLFCV APSSAIILSC  60
SPESISRSSP FSCCGVGRLR FELWDRLIMA TVALVEERDG VESSSLRPPL DVAKPPVVDG  120
VMQFKEGMDG YPVKVRKPYK ITKQREKWTE EEHDKFLEAV KLYGRSWRQI QEHIGTKTAV  180
QIRSHAQKFF SKVVREPGAG DMIEIPPPRP KRKPLHPYPR KCANSSTRAD PKLGPVSPSS  240
GSYQENGSPV SVLSAVQSDA FGSSVSNPST GCTSPASSDG GNNGLVMLNG EEILPRNQAE  300
MDLSPKEVKQ DNSDGDLSEE DSSRKASLKL FGKTLIIPDP EKLCAGESDT GKSPSAESSS  360
DSMGGVQTTM LTSCEVAKES LRAMQTPDSS ALIFELKPGV NSAFVPVKPS CSGSQSTRGF  420
VPYK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966527.11e-121uncharacterized protein LOC101785788
TrEMBLK3XWZ91e-119K3XWZ9_SETIT; Uncharacterized protein
STRINGSi006457m1e-120(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647