PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08391.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 316aa MW: 36654.4 Da PI: 9.4839

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08391.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	294.7	2.4e-90	6	314	64	373
GRAS 64 lppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppsl 142 l +++ts + l+a++l+ + + k++++ N +I++a g++++Hi+D++i +G+QWp++l+ +++R++gpp++ Zmw_sc08391.1.g00030.1.es.mkhc 6 LMAKRTS---AVALLQAYQLYMAAICFKKVAFIFSNYTIYNASLGKKKIHIVDYGIRYGFQWPCFLRRISCREGGPPEV 81 4444444...889999************************************************************* PP GRAS 143 RiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvs 219 RiTg++ p++g +e++eetg+rL ++A+e+gvpf++++++a+++e+++ e+L+++p+E+l+Vn+++q +l+desv Zmw_sc08391.1.g00030.1.es.mkhc 82 RITGIDLPQPGfrPTERIEETGRRLGNYAREFGVPFKYHAIAASKMESIRKEDLNIDPDEVLIVNCMYQFRNLMDESVV 160 ******9**************************************************************** PP GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 +es+rd vL+ +++++P+ ++++ + + +++ F++rf eal yysalfd l+++ pr+s++r+ +E+ ++gr + nv+ Zmw_sc08391.1.g00030.1.es.mkhc 161 IESPRDVVLNNIRKMQPHAFIHAIVNGSFSAPFFVTRFREALFYYSALFDILDTTTPRNSDQRMLIEQNIFGRIALNVI 239 *************************************************************************** PP GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 aceg++r+er et+++W+ r ++aG+k++pl++++++ +++ ++ ++ + + ++ ++++l++gWk+r L+++S W Zmw_sc08391.1.g00030.1.es.mkhc 240 ACEGTDRVERPETYKQWQVRNQRAGLKQLPLNQEIVQVVRSKVKDCYHKDFVIDVDHNWLLQGWKGRVLYAISTW 314 *******************************************889*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.309	1	295	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.2E-88	6	314	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MVYQSLMAKR TSAVALLQAY QLYMAAICFK KVAFIFSNYT IYNASLGKKK IHIVDYGIRY 60 GFQWPCFLRR ISCREGGPPE VRITGIDLPQ PGFRPTERIE ETGRRLGNYA REFGVPFKYH 120 AIAASKMESI RKEDLNIDPD EVLIVNCMYQ FRNLMDESVV IESPRDVVLN NIRKMQPHAF 180 IHAIVNGSFS APFFVTRFRE ALFYYSALFD ILDTTTPRNS DQRMLIEQNI FGRIALNVIA 240 CEGTDRVERP ETYKQWQVRN QRAGLKQLPL NQEIVQVVRS KVKDCYHKDF VIDVDHNWLL 300 QGWKGRVLYA ISTWGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	3e-38	20	314	80	374	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807224.1	0.0	scarecrow-like protein 34
Swissprot	O80933	1e-123	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A0A9UN52	0.0	A0A0A9UN52_ARUDO; Uncharacterized protein
STRING	OMERI12G11480.1	0.0	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP231	31	297