PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc08271.1.g00030.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NF-YC

Protein Properties

Length: 201aa MW: 22476.3 Da PI: 5.3149

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc08271.1.g00030.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	118.3	3.5e-37	58	126	34	102
NF-YC 34 edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdelk 102 dv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+dflvdi+prde+k Zmw_sc08271.1.g00030.1.am.mkhc 58 ADVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFLVDIIPRDEMK 126 69****************************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	4.53E-20	58	122	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.0E-26	58	122	IPR009072	Histone-fold
Pfam	PF00808	4.8E-12	59	107	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
FHPSPAKRSP PHSTHSSTRA KRMNRAAESP PSSSSSSPLL DWCGVEIRPD LRGLIPSADV 60 RMISAEAPVV FAKACEVFIL ELTLRSWMHT EENKRRTLQK NDIAAAITRT DIYDFLVDII 120 PRDEMKEEGL GLPRIGLPPA MGAPADIYPP YYYVPAQQEP GAGMMYGAQQ GHTMTYMWQQ 180 QPQGQEEEPP EDRQQSAQEN S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-38	59	122	32	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	100	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269\|PubMed:26542958}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269\|PubMed:26542958}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020188795.1	1e-81	nuclear transcription factor Y subunit C-4-like
Swissprot	Q655V5	3e-70	NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBL	A0A0A9DBY3	2e-85	A0A0A9DBY3_ARUDO; Uncharacterized protein
STRING	EMT16514	7e-81	(Aegilops tauschii)
STRING	Traes_6DS_8436285E5.1	5e-81	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2703	37	90

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kim SK, et al. OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice. Planta, 2016. 243(3): p. 563-76 [PMID:26542958]