PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc08250.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 267aa MW: 28909.1 Da PI: 9.472 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 96.2 | 6.5e-30 | 45 | 119 | 3 | 74 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 g+kdrhsk+ T +g+RdRRvRlsa++a++++dLqd+LG+ ++sk ++WLl++a ++i++l+ ++++++ + Zmw_sc08250.1.g00020.1.sm.mk 45 GGKDRHSKVKTVKGLRDRRVRLSAPTAIQLYDLQDRLGLNQPSKVVDWLLNAARHEIDKLPPLQFPPQDLVvghL 119 78*************************************************************999983334331 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 29.928 | 46 | 104 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 5.3E-27 | 46 | 107 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MISSNNRQAA DEELARNQHA AVASSRQQWS AQTESRIVRV SRVFGGKDRH SKVKTVKGLR 60 DRRVRLSAPT AIQLYDLQDR LGLNQPSKVV DWLLNAARHE IDKLPPLQFP PQDLVVGHLP 120 LVHEEKFGHH VGAAAALANE RAKAGHADPD VESGAHHHLG RFPGGYHRFM GLNSSLGMVN 180 SAMAAFNNYS GEAWNNNNVH DSGAGSPHVA VAAAQHSSFP SLLSLAPGPH QQVFYSSEAD 240 QQFQVGNLGS QGLSLSSARA FHDHTGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-20 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-20 | 51 | 105 | 1 | 55 | Putative transcription factor PCF6 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004970055.1 | 1e-124 | transcription factor PCF5 | ||||
TrEMBL | A0A3L6SMS6 | 1e-130 | A0A3L6SMS6_PANMI; Transcription factor PCF5-like | ||||
STRING | Pavir.J15913.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2490 | 35 | 84 |