PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc08148.1.g00010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 217aa MW: 23964.8 Da PI: 6.1008 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.1 | 4e-20 | 86 | 171 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevt 79 +fYneYA+++GF r+ +s++sk ++ + +v ++eg ++++ + + +++r+r++ r gC+a+++v +e +++w+v+ Zmw_sc08148.1.g00010.1.sm.mk 86 EFYNEYARRLGFPFRVGRSRRSKGTE----EVLVMKREGMYKKKQPSsdDATRKRERVSMRDGCNAMMEVVRE-SDHWVVS 161 6*********************6666....55666677665555544335689999***************99.9****** PP FAR1 80 kleleHnHel 89 kle+ HnH l Zmw_sc08148.1.g00010.1.sm.mk 162 KLEKAHNHGL 171 ********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.5E-17 | 86 | 171 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 217 aa Download sequence Send to blast |
MIMEGARSEG DELIADYVDC LMSLDTSARS HQNDSIVLGD SIVEGAPSLS VGGAAEPEVM 60 KDFALGDDPN EPVLGMVFES DEAAKEFYNE YARRLGFPFR VGRSRRSKGT EEVLVMKREG 120 MYKKKQPSSD DATRKRERVS MRDGCNAMME VVRESDHWVV SKLEKAHNHG LGTCTKEADS 180 NPGHSGHKSR HSFHKIAGSS LNIRNSPPIM AATDKDF |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193510.1 | 2e-89 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020193511.1 | 2e-89 | protein FAR1-RELATED SEQUENCE 5-like | ||||
Refseq | XP_020193512.1 | 2e-89 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A453JX23 | 7e-90 | A0A453JX23_AEGTS; Uncharacterized protein | ||||
STRING | Traes_5DS_61EE28B2A.2 | 9e-89 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |