PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc08116.1.g00010.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 377aa    MW: 42109.3 Da    PI: 8.7761
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc08116.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM139.32.4e-432163421128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 
                                   lppGfrF Pt+eelv++yL+ k++g++  ++e+vi+ +d++ ++Pw+Lp +  ++ + w++F++r++++a+g r++r+t s
  Zmw_sc08116.1.g00010.1.am.mk 216 LPPGFRFYPTEEELVCFYLRSKLDGRRrDDIERVIPVADVCALDPWQLPGT--SSGEPWFYFCRRQEREARGGRPSRTTPS 294
                                   79***********************996667778***************43..46799*********************** PP

                           NAM  81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   g+Wka g+   v++++g+ +g+kkt+vfy+grap g+kt+W m+eyr+
  Zmw_sc08116.1.g00010.1.am.mk 295 GFWKAAGTPGWVYAADGRPIGTKKTMVFYRGRAPAGTKTKWKMNEYRA 342
                                   **********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.54E-49211369IPR003441NAC domain
PROSITE profilePS5100547.864216369IPR003441NAC domain
PfamPF023652.1E-23217341IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MQLETRVTDE VTEECTIASP GRSFIRRSSS EGPFSSTVRQ AIWVNRLTHP SSCQLCSRGL  60
RQSSTRPHLA VTRERRATHS PADEAVPTYV AVDSRGVSWC PLSIGDCERD AHSPCRCQGM  120
DDCVAGRGGR RSCSGARSVE VEPGSKVIRR SAKRSPRQTL NYNNAYPAIL YNLTCAIQGV  180
LTLFEATSTD ACTYDQDHRP AHNFPGRTST PAMAELPPGF RFYPTEEELV CFYLRSKLDG  240
RRRDDIERVI PVADVCALDP WQLPGTSSGE PWFYFCRRQE REARGGRPSR TTPSGFWKAA  300
GTPGWVYAAD GRPIGTKKTM VFYRGRAPAG TKTKWKMNEY RALEDADAAP PSHALQIRSE  360
FSLCRLYTES GHPRQFD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-3021636917165NO APICAL MERISTEM PROTEIN
1ut4_B5e-3021636917165NO APICAL MERISTEM PROTEIN
1ut7_A5e-3021636917165NO APICAL MERISTEM PROTEIN
1ut7_B5e-3021636917165NO APICAL MERISTEM PROTEIN
3swm_A6e-3021636920168NAC domain-containing protein 19
3swm_B6e-3021636920168NAC domain-containing protein 19
3swm_C6e-3021636920168NAC domain-containing protein 19
3swm_D6e-3021636920168NAC domain-containing protein 19
3swp_A6e-3021636920168NAC domain-containing protein 19
3swp_B6e-3021636920168NAC domain-containing protein 19
3swp_C6e-3021636920168NAC domain-containing protein 19
3swp_D6e-3021636920168NAC domain-containing protein 19
4dul_A5e-3021636917165NAC domain-containing protein 19
4dul_B5e-3021636917165NAC domain-containing protein 19
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148154RRSAKRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGPavir.J36282.1.p7e-93(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140