PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07974.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | G2-like | ||||||||
Protein Properties | Length: 346aa MW: 38107.6 Da PI: 9.0745 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107 | 1.1e-33 | 36 | 90 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl Zmw_sc07974.1.g00030.1.sm.mk 36 KPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 90 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.347 | 33 | 93 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-32 | 33 | 91 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-16 | 35 | 91 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-23 | 36 | 91 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-7 | 38 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.6E-26 | 131 | 177 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010088 | Biological Process | phloem development | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MFPSKKATSA AAAVSSNDRQ MCVQGDSGLV LTTDPKPRLR WTVELHERFV DAVTQLGGPD 60 KATPKTIMRV MGVKGLTLYH LKSHLQKFRL GKQPHKEFND HSVKDAAAME MQRNVASSSG 120 MMGRSMNDRN HVNEAIRMQM EVQRRLHEQL EVQKHLQMRI EAQGKYMQSI LEKAYQTLAA 180 GDVMSCPAGY KSLGNQAVLD VCSLKDIGPS MGFPSLQDLH MYGGGHLDLQ QQMDRSMESF 240 FACSDSSIGS LGKKRPNPYA AGKSPMMWGD DEQGKSEHLQ MALPMMDGGI DVMDSISDVY 300 GDVKPMMSGD STGSKGFDGK LERPSPRRRM GSPSVLGGQT RNLSYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-19 | 36 | 92 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-19 | 36 | 92 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-19 | 36 | 92 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-19 | 36 | 92 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799290.1 | 0.0 | myb family transcription factor APL | ||||
Swissprot | Q9SAK5 | 1e-105 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A1E5VH39 | 0.0 | A0A1E5VH39_9POAL; Myb family transcription factor APL | ||||
STRING | Pavir.Aa03369.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2504 | 38 | 90 |
Publications ? help Back to Top | |||
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