PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc07886.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family B3
Protein Properties Length: 698aa    MW: 74412.8 Da    PI: 6.5242
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc07886.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B361.41.5e-19527623295
                                     EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT-- CS
                              B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLk 75 
                                     +kvl++sdv+++gr+vlpkk ae+h  ++k++ ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++n+L+
  Zmw_sc07886.1.g00020.1.sm.mkhc 527 QKVLKQSDVGSLGRIVLPKKEAETHlpELKTRDGISIPVEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNELQ 604
                                     79*************************999***********7778*******99777777777777.************ PP

                                     TT-EEEEEE-SS.SEE..EEE CS
                              B3  76 egDfvvFkldgr.sefelvvk 95 
                                     egDf+v++  ++ ++++++++
  Zmw_sc07886.1.g00020.1.sm.mkhc 605 EGDFIVIY--SDvKSGKYLIR 623
                                     ********..55588877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-27519628IPR015300DNA-binding pseudobarrel domain
CDDcd100151.16E-32524625No hitNo description
SuperFamilySSF1019364.12E-22525621IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.644526628IPR003340B3 DNA binding domain
SMARTSM010195.6E-19526628IPR003340B3 DNA binding domain
PfamPF023626.3E-16527622IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MDASAGSSPP LSQQNRPKYG DGRGEEPAGE IGGEAGDDFM FADDTFPSLP EFPCLSSPSS  60
STFSSSSSSN SSSAYTNAAG VGRGFVDGAA GEPSEPVSAA EGFDALEDID QILDFASLSV  120
PSWDSEALFP DMGMMIEDAM SAPPHPVGDV PDGRDQGKPL PEGSGGDEPC MDAAAGDDLP  180
RFFMEWLTNN RESISAEDLR RIRLRRSTIE AAAARLGGGR QGTMQLLKLI LTWVQNHHLP  240
KKRPRGAMEE AAGSHGHTQL LSPGMNSGYG FPAGGQDMDG AAGTSWVPYQ QSFTPLPYGG  300
EGTVFPSGAG QQQCMFRQQS CGTSSVVVNS QPFSPPTVGD MHAASGGNLS WPQQYVQFPG  360
ASTVSYPMPR VVPQPFSSGF AGQYTMAGSQ RMAGVETSAT KEARKKRMAR QRRLSCLQQE  420
RRSQRINLGQ IQGAALQEEP SPLAAHSAPV TPWAGGWGSW PSSGQQIRNP LSKSNSSTPM  480
FQVPSPEELP LAASSARQDE SSQRATAASD KRQSGGKADK NMRFLLQKVL KQSDVGSLGR  540
IVLPKKEAET HLPELKTRDG ISIPVEDIGT SRVWNMRYRF WPNNKSRMYL LENTGDFVRS  600
NELQEGDFIV IYSDVKSGKY LIRGVKVRAP ALQEQANGSR ALGKHQHAGA SGSEDGIAVE  660
GAGKPDGAAS KSSRSAHAAA QRARQEAAAM GHKMTVSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A3e-375226261105B3 domain-containing transcription factor FUS3
6j9b_D3e-375226261105B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator specifically required for expression of the maturation program in the seed development. Probably potentiates the response to the seed-specific hormone abscisic acid (ABA). May bind to DNA indirectly.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004971015.10.0regulatory protein viviparous-1
SwissprotP263070.0VIV1_MAIZE; Regulatory protein viviparous-1
TrEMBLK3XF300.0K3XF30_SETIT; Uncharacterized protein
STRINGSi000497m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75293443
Publications ? help Back to Top
  1. Williamson JD,Scandalios JG
    Differential response of maize catalases to abscisic acid: Vp1 transcriptional activator is not required for abscisic acid-regulated Cat1 expression.
    Proc. Natl. Acad. Sci. U.S.A., 1992. 89(18): p. 8842-6
    [PMID:1388272]
  2. Hoecker U,Vasil IK,McCarty DR
    Integrated control of seed maturation and germination programs by activator and repressor functions of Viviparous-1 of maize.
    Genes Dev., 1995. 9(20): p. 2459-69
    [PMID:7590227]