PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc07616.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 422aa MW: 45864.9 Da PI: 10.0174

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc07616.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	110	3.4e-34	78	189	1	89
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec... 73 aag+kdrhsk++T++g+RdRRvRl a++a+rf+d+qd+LG+d++sk+++WL+ +ak+ai+e+++ a+++ Zmw_sc07616.1.g00010.1.am.mk 78 AAGRKDRHSKVCTARGLRDRRVRLAAHTAIRFYDVQDRLGYDRPSKAVDWLIHNAKAAIDEIPDRpeateA---AKAAaea 155 689**************************************************************543221...2111111 PP TCP 74 .eaesssssasnsssg.........................k 89 e+++++ + + Zmw_sc07616.1.g00010.1.am.mk 156 tEQGEQV--------TltsygfgsnpggavtgvaggslvqhS 189 1222222........122233444445555555555555541 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.3E-31	80	191	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	31.678	81	139	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
SNNPTATTST LHYLLQEKER EQLQIYHQQG FSSYLQHHRR QQQQSRGGSG GDGISSGEST 60 PVDALTTAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR 120 PSKAVDWLIH NAKAAIDEIP DRPEATEAAK AAAEATEQGE QVTLTSYGFG SNPGGAVTGV 180 AGGSLVQHSA GADGVKSLFP SSSTASTTPT HDEQYRCSPP DLLSRTTTSS QPQELCLTLQ 240 SNQHQIFSHV SSNHHGIITG AGVPGWPEHN QRMPSWHASE NNMGDGHGGG NGDSYMFSMQ 300 PRQGLDQSQI FSQGEPIQSS GGWTSARTWL DPLAAIQQPS AMAGQHHPST TLPVPSRRAV 360 CGAALRRCRR TIRPIIIVPG RVRTEARRMQ QAPPRVPDRS PSVPFPSRVT SPYRARWPVW 420 LA

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

SNNPTATTST LHYLLQEKER EQLQIYHQQG FSSYLQHHRR QQQQSRGGSG GDGISSGEST  60
PVDALTTAFG SGRIVRSAAG RKDRHSKVCT ARGLRDRRVR LAAHTAIRFY DVQDRLGYDR  120
PSKAVDWLIH NAKAAIDEIP DRPEATEAAK AAAEATEQGE QVTLTSYGFG SNPGGAVTGV  180
AGGSLVQHSA GADGVKSLFP SSSTASTTPT HDEQYRCSPP DLLSRTTTSS QPQELCLTLQ  240
SNQHQIFSHV SSNHHGIITG AGVPGWPEHN QRMPSWHASE NNMGDGHGGG NGDSYMFSMQ  300
PRQGLDQSQI FSQGEPIQSS GGWTSARTWL DPLAAIQQPS AMAGQHHPST TLPVPSRRAV  360
CGAALRRCRR TIRPIIIVPG RVRTEARRMQ QAPPRVPDRS PSVPFPSRVT SPYRARWPVW  420
LA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	7e-19	86	140	1	55	Putative transcription factor PCF6
5zkt_B	7e-19	86	140	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004972181.1	0.0	transcription factor PCF7
Swissprot	Q8LT05	1e-140	PCF7_ORYSJ; Transcription factor PCF7
TrEMBL	A0A368RB94	0.0	A0A368RB94_SETIT; Uncharacterized protein
STRING	Pavir.Eb03208.1.p	1e-177	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12056	23	30