PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07581.1.g00040.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 190aa MW: 20598 Da PI: 10.3467 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24 | 7e-08 | 46 | 98 | 6 | 53 |
HHHHHHHHHHHHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkas.....kapskKlsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ s +++s+ + + Le A +YI++ Zmw_sc07581.1.g00040.1.am.mk 46 KTVERNRRNQMNALYSRLDTLVRDGSapeaeRGGSPATTRPDRLETAAHYIRQ 98 679********************95559999999999**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 6.8E-8 | 45 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.71E-7 | 45 | 116 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-5 | 47 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MVYYYPTRKR TPTPVSWPEM AMQPPPPPPF GNPAAGGGGG FKPDRKTVER NRRNQMNALY 60 SRLDTLVRDG SAPEAERGGS PATTRPDRLE TAAHYIRQTA ERVERLRERK RELTSASSTQ 120 LGSGSSARAA EVEVQHLGSG LHAILVTGAP PSDGTSFHRA VRAVEEAGGE VQNAHFSVVG 180 ARAIYTIHTL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004954617.2 | 1e-72 | transcription factor bHLH162 | ||||
TrEMBL | K3Z116 | 2e-71 | K3Z116_SETIT; Uncharacterized protein | ||||
STRING | Si020234m | 4e-72 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |