PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc07545.1.g00020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 241aa MW: 26751.1 Da PI: 8.1181 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.2 | 1.1e-28 | 91 | 141 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrng lKKA E+SvLCdaev v+ifss gkly+++s Zmw_sc07545.1.g00020.1.am.mk 91 KRIENSTNRQVTFSKRRNGFLKKAREISVLCDAEVGVVIFSSAGKLYDFCS 141 79***********************************************96 PP | |||||||
2 | K-box | 51.4 | 4.6e-18 | 144 | 198 | 17 | 71 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne 71 + e++ +kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k ++ Zmw_sc07545.1.g00020.1.am.mk 144 TSAEIDHVKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLRNLNDKLHQ 198 678*********************************************9988765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.969 | 83 | 143 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.0E-41 | 83 | 142 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-30 | 84 | 153 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.07E-43 | 84 | 160 | No hit | No description |
PRINTS | PR00404 | 6.0E-30 | 85 | 105 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.9E-25 | 92 | 139 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-30 | 105 | 120 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-30 | 120 | 141 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 9.787 | 141 | 241 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.1E-11 | 144 | 196 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
LTQNLPALPF PARTSEQTRK PPGGHSSSCH GDPFYSSLTS TAPPNHITPA PPTEQFQAQA 60 PFREGKKRPG SPASGSEPAA GRMGRGKIEI KRIENSTNRQ VTFSKRRNGF LKKAREISVL 120 CDAEVGVVIF SSAGKLYDFC SPKTSAEIDH VKKENDNMQI ELRHLKGEDL NSLQPKELIM 180 IEEALDNGLR NLNDKLHQQD IALSGSMRDL ELGYHADRDF EAQMPITFRV QPSHPNLQEN 240 N |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
5f28_C | 2e-17 | 83 | 142 | 1 | 60 | MEF2C |
5f28_D | 2e-17 | 83 | 142 | 1 | 60 | MEF2C |
6byy_A | 1e-17 | 83 | 142 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 1e-17 | 83 | 142 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 1e-17 | 83 | 142 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 1e-17 | 83 | 142 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 1e-17 | 83 | 142 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 1e-17 | 83 | 142 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 1e-17 | 83 | 142 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 1e-17 | 83 | 142 | 1 | 60 | MEF2 CHIMERA |
6c9l_A | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-17 | 83 | 142 | 1 | 60 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2). {ECO:0000269|PubMed:14704206}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816957.1 | 3e-97 | MADS-box transcription factor 2 | ||||
Swissprot | Q40702 | 1e-97 | MADS2_ORYSJ; MADS-box transcription factor 2 | ||||
TrEMBL | A0A2T7DDM5 | 1e-105 | A0A2T7DDM5_9POAL; Uncharacterized protein | ||||
STRING | Si002929m | 2e-96 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3434 | 38 | 77 |
Publications ? help Back to Top | |||
---|---|---|---|
|