PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc07504.1.g00030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 234aa MW: 24924.2 Da PI: 10.1911 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 108.2 | 4.1e-34 | 29 | 86 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ Zmw_sc07504.1.g00030.1.am.mk 29 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSLQDAAVVITTYEGKHTHP 86 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-35 | 13 | 88 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.27E-29 | 20 | 88 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.835 | 23 | 88 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-40 | 28 | 87 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-27 | 29 | 86 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
AAKGKGEGEK RPRQPRFAFM TKSEVDHLED GYRWRKYGQK AVKNSPFPRS YYRCTTQKCP 60 VKKRVERSLQ DAAVVITTYE GKHTHPIPAT LRGSTHLLAG HHPHFHLPPP VGGAGFAYGR 120 PCATAFDALG LLQPQPQQHH AIQQLVSGGA GCAAAGVQPQ RVNAGAMASR HAAADQLGLA 180 SIVGTVAGGA ASATTAATSS TVPLRMQHFM AQDYAGLLQD MLPSFIQNDG GNNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-28 | 19 | 89 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-28 | 19 | 89 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004961203.1 | 2e-84 | probable WRKY transcription factor 28 | ||||
TrEMBL | A0A1E5VKW3 | 4e-97 | A0A1E5VKW3_9POAL; Putative WRKY transcription factor 71 | ||||
STRING | Si022220m | 7e-84 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 |